Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0338 ATGTTGGAAGCCAAAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTACCGGAGATCTCTTCTGGATCCGGTGACTCTACCGGAGCTCCGGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATTGCTCAAAACCATGCTTCTTCCTTAAACTCTTCAAATACAAACATGGATGAAGAAGATAGAGAAATTGATCAGGACACAATGGAAGAGGAACTGAGCAAGTGTAAGAAGGAAAAAGATGAAACTCTCGCCCAATCGTCACAAAAGAAAACTGATCTAGACACTGCATCAAGATTAGTGGAAGAATCTATTAACCCCTCCACCGAGGAGGAGCAAAAGTCTAATGAAGAACAGGCTGAGAATGCACAGGATAAGACCTTGAAAAAGCCAGACAAAATACTTCCATGCCCCCGATGTCACAGCATGGATACCAAGTTCTGTTACTACAATAATTACAATGTCAACCAACCACGTCATTTCTGCAAGAACTGCCAGAGATACTGGACTGCCGGTGGGGCCATGAGAAACGTTCCTGTAGGCGCCGGTCGTAGGAAGAACAAGAGTTCTAGTTCTCACTATCGCCAGATAACTATCCCTGATGTAATAGCCGTTCAGAATTCTCAATCTGACTCCCCTAATGGAATCCATCCTCCTCCTCTGAACTGTAACGGCACGGTCTTTACGTTCGGGACCGGTTCACCCTTGTGTGAATCAATAGAATCTGCATTGAACATTGTTGATAAAGGAGTTAATACTTGCACCAATAATGGATTCATTAGACCGGAAAATCTAAGAATTCATGTTCCCTATGCTGGTGAAGAAAATAGCAATGAATCTCCTGACGCATCGACAACGCCAGCGGAAGATGCAACTGTCAACAATTCTCTAGAACAAGCTATGCCGAATTGTAAAAGCTTCCCACCTCAAGTTCCATACTACCCGGGTGCCCCTTGGCTTTTACCGTGGAATCCATCCCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCAGTCTATCCTCCACCGGCTTATTGGGGTTTTACTGTGCCCGGAGCATGGAACAATCCATGGCTGGCACAACCGTCTTCGCCAAGTAGTGCAGCCGTTAACTCTGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGATGAAAGCACGCTAAAATTGAACGAAGCAGCAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCAGAAAAAAGCTCTATATTGACAACTCTTGGGATTAATAACAATAAGACAGATTTGATTCGCGGGGGAGGACTTTTCAAAGCATTCGCATCAAAGGACGATGAAAAAGATGGCATGCAAAACTCACCTGTCATGCAGGCCAATCCTGCAGCAATGTCTAGGTCAATTAACTTCCATGAGACCTCATAA 1482 0.4494 MLEAKDPAIKLFGKTIPVPEISSGSGDSTGAPASSSGDAVDDGIAQNHASSLNSSNTNMDEEDREIDQDTMEEELSKCKKEKDETLAQSSQKKTDLDTASRLVEESINPSTEEEQKSNEEQAENAQDKTLKKPDKILPCPRCHSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKSSSSHYRQITIPDVIAVQNSQSDSPNGIHPPPLNCNGTVFTFGTGSPLCESIESALNIVDKGVNTCTNNGFIRPENLRIHVPYAGEENSNESPDASTTPAEDATVNNSLEQAMPNCKSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPVYPPPAYWGFTVPGAWNNPWLAQPSSPSSAAVNSGPNSPTLGKHSRDESTLKLNEAAGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGINNNKTDLIRGGGLFKAFASKDDEKDGMQNSPVMQANPAAMSRSINFHETS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0338 493 MobiDBLite consensus disorder prediction 107 132 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 21 35 - -
Tpr2g0338 493 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Tpr2g0338 493 Coils Coil 68 88 - -
Tpr2g0338 493 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 492 - -
Tpr2g0338 493 PANTHER CYCLIC DOF FACTOR 2 1 492 IPR045174 GO:0003700|GO:0006355
Tpr2g0338 493 MobiDBLite consensus disorder prediction 70 90 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 375 392 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 463 493 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 1 132 - -
Tpr2g0338 493 Coils Coil 108 128 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 472 493 - -
Tpr2g0338 493 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Tpr2g0338 493 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Tpr2g0338 493 MobiDBLite consensus disorder prediction 375 396 - -
Tpr2g0338 493 MobiDBLite consensus disorder prediction 91 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0338 Tpr-Chr2 4002273 4005428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0338 6 493 C2C2-Dof Transcription Factor Family AT5G39660 42.857 8.53e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g0338 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0338 - - aprc:113862693 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0338 2 4002273 4005428 Tpr3g4409 3 49161883 49165283 ECH
Tpr2g0338 2 4002273 4005428 Tpr2g0338 2 4002273 4005428 ECH
Tpr6g3155 6 34051349 34054496 Tpr2g0338 2 4002273 4005428 ECH
Tpr2g1994 2 23780047 23782248 Tpr2g0338 2 4002273 4005428 ECH