Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4410 ATGGAGAGTGAGTGGAAAGCTAATGAGATAACACCAAATTGTCCAAGATGTGGTTCATCCAACACAAAATTCTGCTACTACAATAACTACAGTTTAACTCAACCAAGATACTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACCTTATTAAGACAACAATCCTTTGATTCTCTCACTTTCAAAAATTCTGACACAATTGGTCATCATTCTTATGATCCTATTTTGAGGACTAATAATATAATTTCATCTTCTTCTTGCTCCTCATTGGTGAATACTGATAGACCAAATATTGATCTTGCATTAGTTTATGCAAATTTTCTCAATAAAAAACCTGATTCTCAGAATAATTCTGATCAAATGGAAAAAAGACCTTTTGATCCTTTAGAAAATTCAAGGCTATCAAATGTTGAAGTTGGTTCAAGTAGTTTAAATTTGTCTGAATTAGAGCTTGGTTTCAAAGGGTGTTTGAGTCTTCAAGAACAATTACAATCCACAACAGTAACACATTTTAGTGAGTTCAATTCTATGCAGACTCTTCAAAAAGATAGAATTGATCATTGTAATATTATTCATGATGATGGTGTGAATTTTGAGCTTCCTCCTCTACCAGGTGAAGAGGATTCATCATCACATGATCATGTTTTGTGGTCCAATTCTGAAATGATGATGAACCTTCCATTTCAAGTTACTCAACCTCCACCACCACCACCACCACTTCTTGGACCTGATCAAATTCATGATGCAGATTTGTTAATTGGTAATTGGAGCCCTTTTGATTTTACAAGGGACGCTTCGTTTTCTCGGCCTTGA 879 0.3561 MESEWKANEITPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLLRQQSFDSLTFKNSDTIGHHSYDPILRTNNIISSSSCSSLVNTDRPNIDLALVYANFLNKKPDSQNNSDQMEKRPFDPLENSRLSNVEVGSSSLNLSELELGFKGCLSLQEQLQSTTVTHFSEFNSMQTLQKDRIDHCNIIHDDGVNFELPPLPGEEDSSSHDHVLWSNSEMMMNLPFQVTQPPPPPPPLLGPDQIHDADLLIGNWSPFDFTRDASFSRP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4410 292 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Tpr1g4410 292 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 288 - -
Tpr1g4410 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 288 IPR045174 GO:0003700|GO:0006355
Tpr1g4410 292 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
Tpr1g4410 292 Pfam Dof domain, zinc finger 12 66 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4410 Tpr-Chr1 51723159 51724793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4410 5 287 C2C2-Dof Transcription Factor Family AT3G52440 40.068 6.18e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr1g4410 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4410 - - aprc:113871380 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4410 1 51723159 51724793 Tpr1g4410 1 51723159 51724793 ECH