Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3925 ATGTTTTCCTCCACCGCAAAAAACCCTAACCCTAAAAATGTGTACCACATCGGAGGTCTGGCGGTCGAATTTCCTTACCAACCGTACGGGTCGCAATTTGCGTTTATGGGTCGAGTAATCTCAACCCTTAACCGAGCTCAGAAAGAAGGCCACTGTCACGCGTTGCTCGAGTCTCCAACTGGTACCGGCAAATCCCTTTCGCTTCTTTGTTCCACACTCGCTTGGCAGCAACATTACAAACCTGCTCCGGACCCAACTGCCGATCCTCTCGCCAATGGTGGAGGTTTTCTTCCCGACGAGGTTTCGCTTTCTTCCGCATCAGAAAATCCAGAATCAGAAGTCACCAATAAGAAGCAGAAGAAAAAGGCAGTTCCAACTATTTATTATGCCTCGAGAACGCACTCACAAATTTCTCAATTGGTTCGTGAATTGCGGAAAACATCATACAGGGTGCCGATGGCTCTGTTGGCATCACGAAAACATTACTGCACCAATAAAAATATATGTGGCAAAGAAAACATTGACGAAGAATGGTTGCTTTTACCTCAATTTTTATTTATTTTATTTTATGAGAATATATTTATATTACGCGTACTGATATATTTCATAAATGTTCTCAGTAAACTACTTTTGAAAGATAAGGAATTAGGCTGTTCAGAATTCAAAAATGTGCATAAAGTCAAAAGTCACCCATCCCTTCAGAAAGGAGGATGCAATGAGGTGCACGACATAGAAGATCTTGTAAAAGTTGGACAATCGGTGAGAGGTTGCTCTTATTATGCTGCCCGTTCTATGTCAGATGATGCACAGTTGGTATTTTGTCCATATAACTACATCATTAATCCAGTCATCCGGGGAGCAATGGACGTGGATATTAAAGGAGCCATCGTGATATTTGATGAAGCTCACAATATAGAGGACATTAGTCGTGATGCTGGTAGTGTGGATATTGAAGAGGATATATTGGACAAACTACAAATGGAGCTCCAGCAACTCCTTCATTCAGATACTGCAATTTACCAACCCCTTTATGAAATGACACAGGGCCTTACTAGTTGGATGGAACAGAAGAAAACTAAACTAGAAAAACGTGACTTTCAGCACTATGTGTCATGCTGGACAGGTGATAAGGCTTTACAAGAGCTTGAAGAAGCAAATATTTCAAAGCAGTGCTTCCCTATATTGCTAGAATGTGCCACTAAGGCAATCAAAGTTGCCACAGACTTGGAAACGGATGCACCGCGTTTAAGTGGCATGTCAGTGATAACATTGGAAGGCTTATTCTTATCACTATCTTATTTCTTCTCTAAAAATGGATCTCACATGTTGGATTACCAGCTTGCTCTTCAGCGAAGTGTTAGAAAACATGAGAGAAGAGCTTTTGGAAACTGGACACATACTTTAAGTCTGTGGTGCTTGAATCCAGAAGTTGTATTTAGAGATGTTGCCGATCTTTCTTTATCAGTCATATTGACTTCTGGGACACTGTCACCGATGACATCATTTTCTTCTGAACTTGGAGTTAAGTTTGAAGCTAGTCTTGAAGCTCCACATGTAATTGATATTGATTCACAGGTGTTGCCTGCTATAATCCCCACCGGTCCTGGTAATATTCCTCTGAATGCAAGTTACAAAACTGCTGATGGATACGCATTCCAGGATGCAGTTGGAAGATCTTTAGAGGAAATCTTCAAGATTGTTTCAGGTGGATGTCTTGTGTTCTTTCCAAGTTATAAATTGATGGAAAAATTATGCACCCGATGGTCTGAAACAGGTCAATGGTCTCGGCTCAATGCAGAAAAGTCACTTTTTGTTGAACCAAAGGGGAGTAGCCAAGATGATTTTGAACTTACATTGAAGGGTTATTATGACTCAATTCATCATGACAAAAGACCTGCTTCTGGAAGGAAAAGAAGGATTAAGAAAACTGATCTAAATCACTTCCATGCAGTTGATTCCCTACAGGATTCTAAGAAAGGAGGAGCAGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCTGATGATAATGCTAGAGTAGTCATTATTGTTGGTATCCCATTTCCAAACATAAATGATATTCAAGTTGCATTAAAGAAAAAGTATAATGACACATTCAAGTCATCTAAACATCTCTTAGGAGGAAATGAGTGGTACTGCCACCAAGCATTTCGAGCTTTAAATCAAGCTGCAGGGCGGTGTATACGGCATAGACTTGATTATGGAGCAATCATCCTATTGGATGAGCGCTTTTGTGAAGAAAGGAATAGAGCATTTATTTCAAAGTGGTTAAGAAGACCCTTGAGAGTGTATGACAATTTTGATGTGTCACTGGAGGGACTAAAATCATTCTTTGAGAATGCGAAGGAGAGGTATGGCGTGAATACAGTCCACCCCACAACGAATTTGGACTTAAATGGTGATGATGGTGTTCAAAACAAGGATGGAATTATGAAGTTTACAAAGAAGAAAAATCAGAAACTGAACAAGTCTAGAAATGGAGGTGATAAAGAAACATCAGTTATTGAGGATAACATCTCTATTCCCATATCAAGCTCTCACAGTCTTGCTGAAAGTCGGCCACCAGCTCAAAGGAATAGTAATGCATACAATTTCAAAGACCATATTAACCTAGAATGCTGTAATCTGACAGAAAGGTTTCCTGGGGAATCATCTGTGCCATTTACGCATGATGAAACCTCCATTGTCAAGGAAAGCCCATGTTTAGATATTGGCAGTGATGCTGGCAGCTCCGATTACTCTAAGAATGACAATTCTGATTCCACCATAATTGAGGCTTCTGCTCGATTTGCAATGGATCGCTTGTCAAGTTTTCCAGTGTCTTCAACTACTGGAAGTAAAGTATCAATGACGGTCACTCCTGAAAAGAGTGTAACTGCAAATAATATTCCAGAAACAGAATCATCTTTGAATTTGAGTGTTAATTCTCACAATCAGAAAAGAAGAAAGTCCATGGTCATACCATTTGTAAACCTCATTGAAGAAGAAAACAATGATGCATCTTGTGCTAGCACTCCTACATGGTGCACAAAAAGCTCATTGGAAGTTAGAGAGGCAACTCATAGAACTGAATGTAGTTATGGGAAAATTTTAAACTCGCAATCTCCTCAGTTACCAACAAACAATATACCTGGTTCATGTTCTGTCCCTCTACTAGACAAAAGGTTACAACTATTTTGTTCACTCTGCAAAAACCCATTGGGACGACATGAGAACCATCTATATCTTACATGCTCTTTGATTTCATCATCAAAAGTTCACTTGAGATTCCTTTTGAAAAAGAGACTGGAAACTTACACTGCGGATACAGAAAAGAGTGTACAAGTTATTGTTACTGATTTTTCATTTGTTGATCAACGTATTTGCAGTAGAATACCCAAAAGTACACAGGAACAGGGTATATGGTGTCCAGAAGATGGGTGTGTATTCAGCACAATTTTTTGTCCCTTCTGCAGTAATACCAACAATTTGCTTGGAGTTCAGATCATGGCAACCAATTCATCAAATGTTCAGTTACTTGACAAGATATTGTTTTTCGTTGATTCTTTGGAAATGAAAAACCAGGAGGAAACAGGAAAAAGTGCCTCAGAGGAAATGGGTTTTTTGCCGATTATCGACTCTGGCATGGGTGGAGTTGCTGCCTTAAATTCCCTTGAGAAATATTCTTATGTTCCCCAACCAGGGAAATCAGAAGTCCGGAGGTCTAAAAAATCAAAGCCAAGACTAAGAGGCTAA 3771 0.3967 MFSSTAKNPNPKNVYHIGGLAVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSTLAWQQHYKPAPDPTADPLANGGGFLPDEVSLSSASENPESEVTNKKQKKKAVPTIYYASRTHSQISQLVRELRKTSYRVPMALLASRKHYCTNKNICGKENIDEEWLLLPQFLFILFYENIFILRVLIYFINVLSKLLLKDKELGCSEFKNVHKVKSHPSLQKGGCNEVHDIEDLVKVGQSVRGCSYYAARSMSDDAQLVFCPYNYIINPVIRGAMDVDIKGAIVIFDEAHNIEDISRDAGSVDIEEDILDKLQMELQQLLHSDTAIYQPLYEMTQGLTSWMEQKKTKLEKRDFQHYVSCWTGDKALQELEEANISKQCFPILLECATKAIKVATDLETDAPRLSGMSVITLEGLFLSLSYFFSKNGSHMLDYQLALQRSVRKHERRAFGNWTHTLSLWCLNPEVVFRDVADLSLSVILTSGTLSPMTSFSSELGVKFEASLEAPHVIDIDSQVLPAIIPTGPGNIPLNASYKTADGYAFQDAVGRSLEEIFKIVSGGCLVFFPSYKLMEKLCTRWSETGQWSRLNAEKSLFVEPKGSSQDDFELTLKGYYDSIHHDKRPASGRKRRIKKTDLNHFHAVDSLQDSKKGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTFKSSKHLLGGNEWYCHQAFRALNQAAGRCIRHRLDYGAIILLDERFCEERNRAFISKWLRRPLRVYDNFDVSLEGLKSFFENAKERYGVNTVHPTTNLDLNGDDGVQNKDGIMKFTKKKNQKLNKSRNGGDKETSVIEDNISIPISSSHSLAESRPPAQRNSNAYNFKDHINLECCNLTERFPGESSVPFTHDETSIVKESPCLDIGSDAGSSDYSKNDNSDSTIIEASARFAMDRLSSFPVSSTTGSKVSMTVTPEKSVTANNIPETESSLNLSVNSHNQKRRKSMVIPFVNLIEEENNDASCASTPTWCTKSSLEVREATHRTECSYGKILNSQSPQLPTNNIPGSCSVPLLDKRLQLFCSLCKNPLGRHENHLYLTCSLISSSKVHLRFLLKKRLETYTADTEKSVQVIVTDFSFVDQRICSRIPKSTQEQGIWCPEDGCVFSTIFCPFCSNTNNLLGVQIMATNSSNVQLLDKILFFVDSLEMKNQEETGKSASEEMGFLPIIDSGMGGVAALNSLEKYSYVPQPGKSEVRRSKKSKPRLRG* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3925 1256 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 10 1137 IPR045028 -
Tpr1g3925 1256 Gene3D - 537 782 IPR027417 -
Tpr1g3925 1256 Coils Coil 315 335 - -
Tpr1g3925 1256 Pfam DEAD_2 129 320 IPR010614 GO:0003677|GO:0003678|GO:0005524
Tpr1g3925 1256 Gene3D - 28 363 IPR027417 -
Tpr1g3925 1256 ProSitePatterns Glutaredoxin active site. 1154 1170 IPR011767 -
Tpr1g3925 1256 Pfam Helicase C-terminal domain 560 770 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Tpr1g3925 1256 PANTHER FANCONI ANEMIA GROUP J PROTEIN 10 1137 - -
Tpr1g3925 1256 SMART Cxpdneu3 578 758 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Tpr1g3925 1256 SMART deadxpd 20 337 IPR006554 GO:0003678|GO:0016818
Tpr1g3925 1256 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 18 361 IPR014013 GO:0005524
Tpr1g3925 1256 CDD SF2_C_XPD 524 756 - -
Tpr1g3925 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 752 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3925 Tpr-Chr1 43376576 43396601 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3925 1 43376576 43396601 Tpr1g3925 1 43376576 43396601 ECH