Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3897 ATGGTTAGCACTCCTAATTCTTCCAATAATCATCACTCTCCGACGAGTGCTCCCTCGTCGGCGCCGCCGTCAGGTGACATTAATACCCCTAATTTTACGCCAAAAACCCTTCCTTCACCCTGGGCTCAGGTCGTCCGTGGCGGCGAGACAGAATCACCTACCGGTGTTCATCAATCACTTCCGTCATCATCATCATCATCCTCCTCGTCTTCTTCCTCTCTGACTACAGGCATAGCTGACCAAGCGCCGTCGTGTGATGATTCTCCAAAGGCGGTATCTATTCCGCCGCCGGTGGATGACTCGAATACGGTAGCCACCGTTGTAGATAACTCCGATGGTAGTGATGGAAATGCAGGTCTTTCTAAAAAGCCTGCATGGAACAAACCCTCAAACGGTGTCGTTGAGACTTCTCCTGTAATGGGTGCTGAATCCTGGCCTGCTTTGTCTGAATCCACCAAAATTTCTGCTAGATTTCCAGCTGAATCGTCCTCCAACGTTGCCAATGTTGGATCACCTTCCACTTCTCAGGGGCCTATAATTTCACATCCCCCTCAGAGACAAGGTACTAATAACGCAAGATCTAGTTCCACTTCTGCAACAAACAATATGCCCAACAGACCAAGACCCCAGAGGCGGGTAGGTGGCAGCAACATTGGGCCTGGTCCTGCTCAAAGCAGCTCGTCCAACCCTCCTACTCCTCCACCGGCGCCTCCTTTTCCTGTATATCAGCTCCCTCCAGTCAGCTATCGGAATATGGGGCCAATCATCCCCGACTCTTCTCCAAGAGATCATCACCGAAACAATAACTGGGATGCCAGACCAGCAGTAGGGGGTTCCTCTCGCAGGGGCAATTTTGGGTCCCATCCACGAGGAGATGGTTCCTATCATCATAATAATTATAGTAGCAGGCGTGATCACGACCGTGGAAATTTTGTGAATACTAGAGATGCCCACGCACCCCAACCAAGGATGCCTCCTAGAGGAATATTGAGGCACCCACCACCCAATACTGGTGCATTTTTGGGTCCTCAGCCGATTGGGCCCTTTCCAAACCCTGTTCCTTATCCTGAGGTGTATTACTTTCCAGCAGTGACGATGGATCCCTTTAGGGGTATGCCAGTCTTCCCCCACAGCCCTTCTCCTGTACCATTCTTACCTGCTGCTGCTGCTGCAGAATCTCCCTTGCCCATTTTGATAGTCAACCAGATTGATTATTACTTTAGTGATGCTAATTTAGCGACAGATGAGTTTTTAAAGTCCAATATGGATGAAGAGGGTTGGGTTCCAATTACCTTGATAGCAAATTTCCCTCGAGTTAGAAACTTGACAAGCAACATCCAGTTGATATTGGAGTCCATGAGAACTTCAAAGGTTGTGGATGTCCAGGGAAACAAGTTGAGGAGGCACGATGAGTGGATGAAATATTTGCCCTCTGCTCAGGTTCAAGCTGATTCTGGTTCTGTTTCACCTGGTGAATCAAGCTACGATAACCTCACTGTTGATTTTCAAACAACTATCACTTTGGAGAAAACAACTAAAGATGAAGGCGAGTTTTCCCGTCAGTCTTAA 1569 0.485 MVSTPNSSNNHHSPTSAPSSAPPSGDINTPNFTPKTLPSPWAQVVRGGETESPTGVHQSLPSSSSSSSSSSSSLTTGIADQAPSCDDSPKAVSIPPPVDDSNTVATVVDNSDGSDGNAGLSKKPAWNKPSNGVVETSPVMGAESWPALSESTKISARFPAESSSNVANVGSPSTSQGPIISHPPQRQGTNNARSSSTSATNNMPNRPRPQRRVGGSNIGPGPAQSSSSNPPTPPPAPPFPVYQLPPVSYRNMGPIIPDSSPRDHHRNNNWDARPAVGGSSRRGNFGSHPRGDGSYHHNNYSSRRDHDRGNFVNTRDAHAPQPRMPPRGILRHPPPNTGAFLGPQPIGPFPNPVPYPEVYYFPAVTMDPFRGMPVFPHSPSPVPFLPAAAAAESPLPILIVNQIDYYFSDANLATDEFLKSNMDEEGWVPITLIANFPRVRNLTSNIQLILESMRTSKVVDVQGNKLRRHDEWMKYLPSAQVQADSGSVSPGESSYDNLTVDFQTTITLEKTTKDEGEFSRQS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3897 522 MobiDBLite consensus disorder prediction 99 117 - -
Tpr1g3897 522 ProSiteProfiles La-type HTH domain profile. 389 478 IPR006630 -
Tpr1g3897 522 PANTHER LA-RELATED PROTEIN 1B 51 516 - -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 258 306 - -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 1 38 - -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 226 244 - -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 148 207 - -
Tpr1g3897 522 Gene3D - 388 478 IPR036388 -
Tpr1g3897 522 SUPERFAMILY "Winged helix" DNA-binding domain 392 475 IPR036390 -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 1 245 - -
Tpr1g3897 522 SMART la 393 469 IPR006630 -
Tpr1g3897 522 CDD LAM 399 468 - -
Tpr1g3897 522 PANTHER LUPUS LA PROTEIN-RELATED 51 516 IPR045180 -
Tpr1g3897 522 MobiDBLite consensus disorder prediction 52 82 - -
Tpr1g3897 522 Pfam La domain 399 454 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3897 Tpr-Chr1 43097996 43102653 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3897 1 43097996 43102653 Tpr1g3897 1 43097996 43102653 ECH
Tpr1g3897 1 43097996 43102653 Tpr7g0206 7 1714137 1718470 PCT