Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3874 ATGATGTCTGTTTCTTCTCTTACTGTTACCTCTGCCGTGGGACCCTTTCTTTCACGATCCCGCCGGCGTTCAACTACGGCCGTCCGATCCAGCACGGTGTCAGTTGGACCAACCAGATTATTAACGAAACTGAAACATGATTGTGACACTCCTCTTCCTCTTCTTCAACAAGTGGCAGATACCATGTCTTCTCAAATGCAGGCCGGGCTTTCCTCTGATCATGGGCCCGGGCTTCCCATGATACCCACTTTTGTCCACACTCTTCCCACCGGAAATGAGAAAGGATTGTTTTATGCATTGGATCTTGGTGGAACAAATTTTCGTGTGTTGAGAGTACAATTAGGTGGCAAAGATGATCGTGTCATTTCAACTGAGTTTGATCAAGTTTCTATACCTCATGATCTAATGTTTGCTACATCCGAGGAGCTGTTTGACTTCATTGCTTTGGGGCTAGCCAAATTTGTGGCTAAAGAGGATGATAGATTTCATTTTCCACAAGGAAGAAAGAGAGAGATTGGTTTCACATTTTCGTTTCCTGTCAAACAAACATCTATCGACTCTGGCATACTAATCAAGTGGACCAAGGGTTTCGCTGTCTCTGGAACTGTAGGAAGAGATGTGGTTGCTTGTTTGAATGAGGCAATGGAAAGACAAGGATTAGATATGCGAGTTTCTGCTCTGGTTAATGATACTGTTGGAACACTAGCCGGAGCAGAATACTGGGACAATGATGTTAAGGTTGCTGTTATTTTAGGTACCGGAACCAATGCTTGCTATATTGAGCAGATAAGTTCCATTCCAAAACTACAAGGCCATGTCTCTTCTTCTGGTAAAATGATCATTAGTACTGAATGGGGTGCTTTCTCAAATGGTCTACCTTTAACTGTATTTGATAGAGAAATGGATGCTGCCAGCGTCAATCCTGGTCACCAGATCTTTGAGAAGACAATCTCAGGAATGTATCTTGGTGAAATTGTGAGACGAGTTCTATTCAATATGGCTGAAGAGGAAGGTTTGTTTGGAATATCTATCCCTCAAAAACTGTCTACGCCATTCATACTCGGGACTCCAGATCTATGCGCCATGCAGCAGGATAATTCTGGCGATTTAGATGCAGTTGGATCCCTCCTCTATGATAAAGCAGGGGTTGAATCCAATCTACGTGAAAGAAAAACAGTTCTAGAGGTTTGCGAGACAATTGTAAAGCGAGGCGGTAGCTTAGCTGGTGCAGGAATTGTGGGAATTCTACAAAAAATGGAAGAGGATTCAAAAGGTCTTATCTTTGGAAAGAGAAGTGTTGTTGCCATTGATGGGGGTTTGTATGAAAATTATCCTCAATACAGGACTTACTTGCAAGATTCAGTAAAGGAAATATTAGGAACAGAAAAGTCAAACAATGTTGTGATAGAACATTCAAAAGATGGTTCTGGTATTGGAGGTGCTCTATTGGCAGCTTCAAATTCCATGTACAGCCAAGATTGA 1482 0.4231 MMSVSSLTVTSAVGPFLSRSRRRSTTAVRSSTVSVGPTRLLTKLKHDCDTPLPLLQQVADTMSSQMQAGLSSDHGPGLPMIPTFVHTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKDDRVISTEFDQVSIPHDLMFATSEELFDFIALGLAKFVAKEDDRFHFPQGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGTVGRDVVACLNEAMERQGLDMRVSALVNDTVGTLAGAEYWDNDVKVAVILGTGTNACYIEQISSIPKLQGHVSSSGKMIISTEWGAFSNGLPLTVFDREMDAASVNPGHQIFEKTISGMYLGEIVRRVLFNMAEEEGLFGISIPQKLSTPFILGTPDLCAMQQDNSGDLDAVGSLLYDKAGVESNLRERKTVLEVCETIVKRGGSLAGAGIVGILQKMEEDSKGLIFGKRSVVAIDGGLYENYPQYRTYLQDSVKEILGTEKSNNVVIEHSKDGSGIGGALLAASNSMYSQD* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3874 493 SUPERFAMILY Actin-like ATPase domain 244 486 IPR043129 -
Tpr1g3874 493 SUPERFAMILY Actin-like ATPase domain 37 242 IPR043129 -
Tpr1g3874 493 Pfam Hexokinase 42 240 IPR022672 GO:0005524|GO:0005975|GO:0016773
Tpr1g3874 493 Gene3D - 61 473 - -
Tpr1g3874 493 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 21 490 - -
Tpr1g3874 493 Pfam Hexokinase 246 485 IPR022673 GO:0005524|GO:0005975|GO:0016773
Tpr1g3874 493 ProSiteProfiles Hexokinase domain profile. 35 485 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Tpr1g3874 493 CDD NBD_sugar-kinase_HSP70_actin 99 261 - -
Tpr1g3874 493 Gene3D - 83 484 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 98 114 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 172 197 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 224 240 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 247 261 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 311 333 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 393 415 - -
Tpr1g3874 493 PRINTS Hexokinase family signature 470 486 - -
Tpr1g3874 493 ProSitePatterns Hexokinase domain signature. 172 197 IPR019807 GO:0004396|GO:0005524|GO:0006096
Tpr1g3874 493 PANTHER HEXOKINASE 21 490 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3874 Tpr-Chr1 42865403 42868503 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3874 1 42865403 42868503 Tpr1g3874 1 42865403 42868503 ECH