Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3862 ATGGGAGTTCCGGCTTTCTACCGATGGCTCGCGGAAAAATATCCGATGGTGATTGTCGACGCAGTTGAAGAAGAACCTGTTGTTATCGAAGGTGTTGAAATCCCAATTGATTTGAGTAAACCAAACCCTAATAATCTCGAATACGATAACCTTTATCTTGATATGAATGGTATCATTCATCCTTGTTTTCATCCTGAGGATAGGCCATCACCGACATCTTTCGAGGAGGTGTTTGAGTGTATGTTTGATTACATTGATAGGTTGTTTAACATGGTGCGACCTAGGAAGCTGCTGTTTATGGCTATTGATGGTGTTGCACCGAGGGCTAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCAGCTAAAGACGCAGCTGATGCGGCTGCTGAAGAGTCAAGGTTACGGGAGGAATTTGAAAGTGAGGGCAGAAAGCTTCCTCCTAAGGAAGAGTCACAAACTTTTGATTCAAATGTAATCACGCCTGGAACTGAATTCATGGCTGTTTTATCAATTGCACTTCAGTACTATGTTCATCTTAGGCTGAACAATGACCCTGGTTGGAAAAATATCAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTTCAAAGAAATCTTGAAGGATATGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGGTCTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGTCCAGACAAATGCTTTGTGTGTGGTCAAGTGGGTCATATGGCTGCAGAATGTGAAGGAAAGGCCAAAAGGAAGTCAGGGGAATTTGATGAAAAGGGCGATGCTATTGTTGTTAAAAAGCCTTTCCAGTTTCTGAACATTTGGACTCTGAGGGAATATCTGGAGTTTGAGATGAGAATACCTAATGCTCCTTTTGAGATTGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTTGTTGGAAATGATTTCCTACCACATATGCCTACGCTGGAGATTCGTGAGGGTGCAATTAACTTGCTGATGGCAGTATACAAGAAGGAATTTAAGGAATTGGGTGGTTATTTGACAAATGGTAGTAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTTGGATCATACGAAGACAGCATATTCCAGAAAAGAGCTCGACAGCAACAGCGAACCGTGGAAAGAATTAAGCGTCAAAAGTCACAAGCAAGAAGAGGAGATGATGTTGGGCCTCAAGTTCAACCTGAGTCTCTAGTTCCAGTTACACAATTCCGCGGTTCTCGTCTCGCTTCAGCTCCAATGGTTTCACCATTTCAACAAGCTGGGCCCACCTCAGTCAGAAAAGGTAATAAAGAAGTCCATGAGAGGCCCAGTAAAGTTTCTAGGTCATATTCAGGAGCAACTGTTGCTGCTGCAATCGTTGCAGCGGAGAATAGCCTTTTAGAAGATTATTCTTCTGCTTTTCAGGCTCAAGATAACAAAGACGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAATCTGATGTGTTCAACTCAAAAGGTGGTCATGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAAGAAAAGTTTTCTGCTCAAACTCCTGAAGAACTTGATGCTATACGGAAAGATGTTGTCTTGAAATATACTGAGGGTCTATGCTGGGTGATGCATTATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCGTATCATTATGCTCCCTTTGCGTCTGATCTCAAGGACCTTGGTGAGCTCAATATTAACTTTGAGCTGGGTACTCCATTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCTGCTGCAAGCTCTCATGCTCTGCCCGAGCCGTATAGGAAACTTATGACTGATCCCAACTCGCCAATTATTGACTTCTATCCAATAGATTTTGATGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCAAAGTTACCTTTTATTGATGAAGCCCGTCTCCTTCAGGAAGTGCGGAAAATAGAAGACTTGTTAACGCCAGAGGAAAAGCGACGAAATGCAATAATGTTCGAGATGCTTTTTGTAAATTCATGTCATCCTCTCTCTGCGTGCATTAGTACACTCGACAACAAATGTAGAAACATGTCCAACTCTGAACGCGCTGATGTCAAAGAAAAAATTGATCCCAATGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCCATCTTCAGGTCCCCTATTGCAGGCATGGAAGACATTATGGATAATCATGTCATATGTGCAATATATAGACTTCCAGATGTACATGAACATATAACCCGACCTCCACATGGAGTTAAATTTCCAAAGAAGATTGTGACTCTTGGGGATCTAAAACCTGAACCCGTGTTATGGCATGAGGATAATGGTAGGAGATTTAATGAGGGTAATGGTAGGAGATTTAATGAGGATAATGGTAGGAGATTTAATGAGGATAATGGTAGAAGATTTAATGAGGATAATGGTAGAAGATTTAATGAAAGTGGAAGGAGAAACCCTCCAGGAGCTATATCCGGTCGGGAGCTAGGAGATGCAGCACACAGAATGGTTGCAAATTCATTACAGATCAGGACGGACTCAAATAGATACCAGCATGCTAATGGATCTACAATGCCTTATAATGGACCAAGGGGACAGAGACCATCACACCATGGCCATAACTATGGATCACACCCTGGCCAAGATTATAGATCACGCCCTGGCTATGCCGTAATGCCGCCTTTATCAGTTCCTCCGCAGTATATACCATACGCTGCTGTCCCTCCAGTGGAGTATGGTTATAATCAACCATACTCTCCACCAGTGCTGCCTAGTCCTCATCAACACCAATCAAATTCTTTTCCAAGAGGGGACCACCAAAACCCTAGATCACAACATTATGAAAGAAATAGCCATCATGTTAATGGTGGAAATGCAAGGCATTCCTCAGGAAACAATCAGAATCCTCATTTTACAAATACACAAGGTTCATTTGCCCATCAAAGTCACCACGGCGCTGGTCGCCACAGCCGAAACTTCCGACCATTTAGAGGTTCTACTACCCATTGGACTTCTTCGGCTAACCCTAGTGGGTCTAGGGAATACGGTCAACATTCGGCCAATCATTATTCTTTATTAGATAGAGGAGCAAGCCGGAAGCCGAGGCCTCCAACCAATCATAATCACAAATAA 3324 0.4242 MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVEIPIDLSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEESRLREEFESEGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLGLATHEIHFSILREVVFTPGPDKCFVCGQVGHMAAECEGKAKRKSGEFDEKGDAIVVKKPFQFLNIWTLREYLEFEMRIPNAPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFKELGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARQQQRTVERIKRQKSQARRGDDVGPQVQPESLVPVTQFRGSRLASAPMVSPFQQAGPTSVRKGNKEVHERPSKVSRSYSGATVAAAIVAAENSLLEDYSSAFQAQDNKDDLKIKLKGILRDKSDVFNSKGGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFDVDMNGKRYAWQGIAKLPFIDEARLLQEVRKIEDLLTPEEKRRNAIMFEMLFVNSCHPLSACISTLDNKCRNMSNSERADVKEKIDPNERDTCSGGMNGYISLCGGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDVHEHITRPPHGVKFPKKIVTLGDLKPEPVLWHEDNGRRFNEGNGRRFNEDNGRRFNEDNGRRFNEDNGRRFNESGRRNPPGAISGRELGDAAHRMVANSLQIRTDSNRYQHANGSTMPYNGPRGQRPSHHGHNYGSHPGQDYRSRPGYAVMPPLSVPPQYIPYAAVPPVEYGYNQPYSPPVLPSPHQHQSNSFPRGDHQNPRSQHYERNSHHVNGGNARHSSGNNQNPHFTNTQGSFAHQSHHGAGRHSRNFRPFRGSTTHWTSSANPSGSREYGQHSANHYSLLDRGASRKPRPPTNHNHK* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3862 1107 Coils Coil 407 427 - -
Tpr1g3862 1107 Pfam Xrn1 helical domain 325 829 IPR041412 -
Tpr1g3862 1107 Gene3D - 612 714 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 988 1013 - -
Tpr1g3862 1107 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Tpr1g3862 1107 PANTHER 5'-3' EXORIBONUCLEASE 1 852 - -
Tpr1g3862 1107 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Tpr1g3862 1107 CDD PIN_XRN1-2-like 51 312 - -
Tpr1g3862 1107 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 863 889 - -
Tpr1g3862 1107 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 130 153 - -
Tpr1g3862 1107 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Tpr1g3862 1107 PANTHER 5'->3' EXORIBONUCLEASE 1 852 IPR027073 -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 1064 1083 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 989 1004 - -
Tpr1g3862 1107 Gene3D - 1 133 - -
Tpr1g3862 1107 Gene3D - 148 386 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 460 481 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 130 151 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 1064 1107 - -
Tpr1g3862 1107 PIRSF Exonuclease_Xrn2 1 1088 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 863 878 - -
Tpr1g3862 1107 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3862 Tpr-Chr1 42750952 42759117 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3862 1 42750952 42759117 Tpr1g3862 1 42750952 42759117 ECH