Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3861 ATGGATAGAAGATGGCCTTGGAAGAAAAAATCATCTGATAAGACTGTGCTTGACAAAGTTGTTGCTGAATTGGATTCTGCTGGTGGTGCCTCTAATCAGAGCAATCAGGAGGTTTATAAGAAGCCGAACTATGTCCAAATCTCTGTAGAGTCATATTCACATCTGACGGGTTTGGAGGATCAAGTGAAGACATATGAAGAAAAGGTTCAGACACTTGAGGATGAGATCACTGAATTAAATGAAAAACTGTCGGCGGCAAACTCAGAGATAACTACCAAGGAAGCCTTGGTAAAACAACATGCTAAAGTAGCTGAAGAGGCTGTCTCTGGCTGGGAAAAGGCAGAAGCAGAAGCTTTGGCGTTGAAGAACCATCTAGAATCTGTCACTCTTTTGAAACTTAGTGCTGAGGATCAGGCATCACAGTTAGATGGTGCTCTTAAAGAGTGTATGCGACAGATAAGAAACCTGAAGGAAGAACATGAACTGAAAATACAGGATGTTGCCCTCGCAAAAACCAGGCAATTGGACAAGATTAAGGGTGATCTTGAGGCTCGGATACACAACTTTGAACAGGAACTGCTCAGGTCGGCTGCTGATAATGCAGCTCTGTCCAGGTCTTTGCAGGAGCGCTCTAACATGCTAGTCAAAATAAGTGAAGAAAAAGCTCATGCCGAGGCTGAAATTGAGCATCATAAGAGTAACATAGAATCATGTGAAAGAGAAATAAATTCACTTAAATATGAGCTTCATGTTATTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAGAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAGGGTGTTAAAAAAATTACTAAATTAGAGGCAGAGTGCCAAAGGTTACGTGGTCTAGTACGGAAAAAGTTACCTGGTCCTGCTGCGCTCGCACAAATGAAGCTGGAAGTTGAAAGTCTTGGCCGAGATTATGGAGAAACTCGATTAAGGAAGTCTCCTGTCAAACCTGCTAGTTCTCATTTCTCTCCATTGCCTGATTTCTCCCTGGAGAATATACAGAAATTCCAGAAAGATAATGAATTTCTTACAGAGCGCTTATTGACAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCAAAACGTAACAGTGAATTGCAGGCTTCAAGGAGTATGTGTGCTAAAACACTTAGCAAACTTCAAATTTTGGAAGCACAAGGCCAGACAAGTAATCAGCAGAAGGGATCTCCAAAATCCCCCATCCATATGAACCATGAAAGCATTTACAGCCAAAATACAGGCTATGCACCAAGCATGATCTCCATATCTGAAGATGGTAATGACGATGCAGGAAGTTGTGCCGAGTCTTGGTCTACAGCAATAATCTCTGAGCTATCCCAAATCCCAAAAGAAAAGAATACCGATGAATCGGGCAAATCTGAAGTGACTAAGAAGTTGGAACTGATGGATGACTTTCTAGAGGTGGAGAAATTTGCTGGATTATCAAACGACTCTAATGAAGATGCCTCTGTGACAGTTACTTCAAACAATAAGACGGATGAAATCATGACCAATGATGTATCAGAAGTCAGTACCAGCAAAGATGTTCCCTCCGAGTCTGAAAATAAGAGTGATTCAAATGCATTGCCAAGTCAAGTGTCTCCTACTGCAGTATCACCCAGTCTCAGTGGGATTGATAGCTTATCAACGGAAGAGCTTCAATCAAGAATACTATCAGTTTTTGAGTCTACGACTAAGGATGCTGATATATGTAAGATCCTGAACGATATTAAACATGTTCTTGAAGAAGCACACGACACATCCATCCAAGACTCTGTAGCTGTCATTGCCCTTGATGTCACACCTACTGATAGTCCGTGTGATAAAAAGGATAATCCTGAAGATGCCGGTTCAATTTCAGAAAAAGAACTCATTTCATCCCAAGAACCTACTGAATATATGCAGATAACTTCTGATATAGAAGCTGCAATATCTCAAATTCACGACTTCGTATTGTTCCTAGGTAGAGAAGCAATGACAGTTCATGATATATCTTCTGATGGAGATGGGATCAGCCAAAAGATGGAGGAGTTCTCTGTTACTTATAATAAAGTTAAATGCCATGAAGCAAGTTTGCGACAATTTGTTCTTGATCTGTCTCATGTCTTGACTAAAACAAGTGAATTCAGATTTAATATCCTTGGTTATAAGGGTATGGAAACTGAAACTAGCAGTCCTGATTGCATAGATAAAATTGCTCTGCCTGAAAATAAGTTAGTTCAAGACAACTCGTCCGGAGAGAGATATCAAAATGGTCATTCCCATATTATTAATCCTTGTTCTAATCCCGAGGTTCCTGATGATGGAAATTTGACCTCAAGCTATGAATCAAATGTCACATCACAAAAGTTCTCCATCGAGGACTTTGAGGAATTGAAATTAGAGAAAGAGAAGGCAATTGTGGATCTGTCGAAATGTTCTGAAAATCTTGAAATGACAAAGTCTCAATTGCAAGAGACCGAGCAACTTCTAGCTGAAGTTAAATCACAATTGGCTTCTTCTCAAAGGTCAAACAGCTTGGGCGAGACTCAACTAAAATGCATGGCAGAGTCATACAGATCACTTGAAACACGTGCACAGGAGTTTGAAACTGAGCTCAACCATCTGCGGAAGAAGACAGAATCTCTTGAGAATGAACTTAAAGATGAAAAGAGATCTCATGAAGCAGCTTTGGCGAAGTGCAAGGAGTTAGAAGAACAATTGCAAAGGAATGAGAGCTCAGCTGCTGATAATGAGCTTAAGACTAAAAAGGAGAGAGACTTGGCTTCTGCTGCTGAAAAACTAGCTGAGTGTCAGGAAACCATATATCTTCTTGGTAAGCAGCTAAAATCTATGCATCCTCAAACAGAACCGATGGGATCTTTGCATAGTGAAAGGCTTTCAAAGGTTGAAGGCTTCACAGAGCGTGAATTTCAGAGTCCAAATTTGCATGATCTGGATCAGGTGGAGATGGACGGTGCTAGTTTTGCTTTTATGCAAAGACAGGGTGCAGAGTCCCCTTTGCATTTTACCAACAGTTTATATAGTCCATCAGATAATGACTCAAACTTTCAAGCCATATCTCCTGTACAGCATCCAAGTCACAAGCCAACAAAGTCAACCTCTTCATCAGCTTCTTCAACTCCTACACCAGAGAAACATGCTCGAGGTTTTAGTAGATTCTTTTCATCAAAAGGAAAAGCCGGTCATTGA 3249 0.406 MDRRWPWKKKSSDKTVLDKVVAELDSAGGASNQSNQEVYKKPNYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEITELNEKLSAANSEITTKEALVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLSAEDQASQLDGALKECMRQIRNLKEEHELKIQDVALAKTRQLDKIKGDLEARIHNFEQELLRSAADNAALSRSLQERSNMLVKISEEKAHAEAEIEHHKSNIESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQHMEGVKKITKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGETRLRKSPVKPASSHFSPLPDFSLENIQKFQKDNEFLTERLLTMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQILEAQGQTSNQQKGSPKSPIHMNHESIYSQNTGYAPSMISISEDGNDDAGSCAESWSTAIISELSQIPKEKNTDESGKSEVTKKLELMDDFLEVEKFAGLSNDSNEDASVTVTSNNKTDEIMTNDVSEVSTSKDVPSESENKSDSNALPSQVSPTAVSPSLSGIDSLSTEELQSRILSVFESTTKDADICKILNDIKHVLEEAHDTSIQDSVAVIALDVTPTDSPCDKKDNPEDAGSISEKELISSQEPTEYMQITSDIEAAISQIHDFVLFLGREAMTVHDISSDGDGISQKMEEFSVTYNKVKCHEASLRQFVLDLSHVLTKTSEFRFNILGYKGMETETSSPDCIDKIALPENKLVQDNSSGERYQNGHSHIINPCSNPEVPDDGNLTSSYESNVTSQKFSIEDFEELKLEKEKAIVDLSKCSENLEMTKSQLQETEQLLAEVKSQLASSQRSNSLGETQLKCMAESYRSLETRAQEFETELNHLRKKTESLENELKDEKRSHEAALAKCKELEEQLQRNESSAADNELKTKKERDLASAAEKLAECQETIYLLGKQLKSMHPQTEPMGSLHSERLSKVEGFTEREFQSPNLHDLDQVEMDGASFAFMQRQGAESPLHFTNSLYSPSDNDSNFQAISPVQHPSHKPTKSTSSSASSTPTPEKHARGFSRFFSSKGKAGH* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3861 1082 Coils Coil 350 377 - -
Tpr1g3861 1082 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1082 - -
Tpr1g3861 1082 Coils Coil 55 96 - -
Tpr1g3861 1082 MobiDBLite consensus disorder prediction 1028 1082 - -
Tpr1g3861 1082 MobiDBLite consensus disorder prediction 504 534 - -
Tpr1g3861 1082 MobiDBLite consensus disorder prediction 541 562 - -
Tpr1g3861 1082 Coils Coil 214 273 - -
Tpr1g3861 1082 MobiDBLite consensus disorder prediction 1028 1065 - -
Tpr1g3861 1082 Coils Coil 822 856 - -
Tpr1g3861 1082 Coils Coil 139 166 - -
Tpr1g3861 1082 Pfam Filament-like plant protein, long coiled-coil 93 971 IPR008587 -
Tpr1g3861 1082 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1082 - -
Tpr1g3861 1082 Coils Coil 864 953 - -
Tpr1g3861 1082 MobiDBLite consensus disorder prediction 504 562 - -
Tpr1g3861 1082 SUPERFAMILY Tropomyosin 821 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3861 Tpr-Chr1 42740438 42746287 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3861 1 42740438 42746287 Tpr1g3861 1 42740438 42746287 ECH
Tpr1g3861 1 42740438 42746287 Tpr7g0249 7 2026939 2032526 PCT