Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3858 ATGAGTTCCTTAGAAGAAAAGGTTAAAAGTGTTGGAGCTGCAGGAGTTGGAGGAGGACTTGTTGCTGAGATGAAATTGCTTAAAGAAATGCAGGAACATTGTGGGGTAAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCTGGCCCTCTTGTGTCTTTGCCTCAAGTGGGTGGTCTTGTTTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACAGCAACCTCACAGATTCCAAACTACCCTAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACATTACATGCTGATAAGGAGACAGATGAAATCTATGCTCAAATAACTCTCCAACCATTGAATTCTGAAAAAGAAGTGTTTCCTATATCTGAGTTTGGACTAAGCAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACTAGCACACATGGTGGCTTTTCTGTTCCGCGCAGGGCAGCGGAGAAGCTATTTCCTCCTTTGGATTACACAATTCAACCACCGACACAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTCAGCCGAAGAGACACCTTCTCACAACGGGGTGGAGCTTGTTTGTAGGCTCAAAAAGGCTTCGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTCAGGCGTGCTAATCGTCAACAGACAACACTACCATCATCAGTACTTTCTGCCGATAGCATGCACATTGGCGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCACAATTTTCTACAATCCAAGGGCATGTCCTTCAGATTTTGTTATTCCACTGGCAAAATACAGAAAATCTGTTTACGGGACTCAGCTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGAAAGCGCAGATATATGGGCACAATTGTCGGTATCGGTGATGTCGATCCATTAAGGTGGCCTGGTTCAAAGTGGCGAAATATTCAGGCCGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGAGTTAGTGTATGGGAGATTGAAACTCCTGAAAGCCTTTTTATCTTTCCTCCTATGACTTCGAGTCTAAAACGGCCATTTCAATCCGGATTTTCAGAAAATGAGTGGGGGACTTTGTTAAGAAGACCTTTTATCAAAGCACCTGAAAATGGAACAATGGATCTCTCAAACTCAATGTCAAATCTCTACCAAGAAAACATAATGAAGATGCTTTATAAACCACAAGTTATCAACAACAATGGAACCTTTTTACCTGTCATGCAACAAGAATATGTTCCTACACGAGTTCCCTTGCAAGATATGAAGTCATCGCAGGCAATAGAGAATCCCAACGTTCATCTTTCAAGTACAGAAAGCATAATACCTAATTCCTTAAACATGCATTCATTGTTAAAAAGTGATCAACCTGAAACATTGCACCCTTTGTCCAAAACTGATAAGCTCAAATTAGAATCCGAGGTGTTACCTGATAATATGTTTGACTTTCCTCCTTTCGAAGGCAGCAGTATTGAGGCCGCAAACCAATTAACATATCATAATAAAAACCAAATCCAGAATCCATCACTCACTCAAACTAGTCCATGGCCTATGCAGCAGCCTCAGTTAGAATCATCGTTGTTGCATCCTCAACTGATTGATACGGTTCAACCTGATTCTTCTATTATAAACAACATGCTTCCTCAGCTAGACGTTGACGAATGGATGACGTATTCTTCCTGCCAACATCAAGTAGTGAATCCCTCTATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAAGGATCTATCGGATGAAAGCAATAACCAAAGTGAAATTTGTGCCAGTGTTGATGTTAGTAATAGTGTGAATAACACCACTATGGCTGATCCTTCTACTTCGCACACCATTTTCGATGACTTTTGCACAATGAAGGAGAAAGATTTTCAGCAACCTCAAGATTGCATGGTCGGCAACTTAAGTTCTAGTCAGGATGGCCAGTCTCAGATAACCTCCGCAAGTCTAGCTGAGTCACACGCCTTTCCTCTGCGAGACAACTCGGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGTAGCTTTCTGAATAATAACTCATGGAAGCAAGTAGCTGCACCGATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAAGAGTTGGTCCGCGCTATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAGGGTTCCGGATGGAAATTAGTATATGTAGATTATGAGAGCGATGTTCTACTTGTTGGAGATGATCCTTGGGAGGAATTTGTGGGATGTGTCCGCTGTATAAGAATATTATCGCCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTCAACAGTGGAGCATTGCAAGGAATCAATGTTTGA 2571 0.4162 MSSLEEKVKSVGAAGVGGGLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQITLQPLNSEKEVFPISEFGLSKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGIGDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPPMTSSLKRPFQSGFSENEWGTLLRRPFIKAPENGTMDLSNSMSNLYQENIMKMLYKPQVINNNGTFLPVMQQEYVPTRVPLQDMKSSQAIENPNVHLSSTESIIPNSLNMHSLLKSDQPETLHPLSKTDKLKLESEVLPDNMFDFPPFEGSSIEAANQLTYHNKNQIQNPSLTQTSPWPMQQPQLESSLLHPQLIDTVQPDSSIINNMLPQLDVDEWMTYSSCQHQVVNPSIPSMNQEVWDNYVKNFNLKDLSDESNNQSEICASVDVSNSVNNTTMADPSTSHTIFDDFCTMKEKDFQQPQDCMVGNLSSSQDGQSQITSASLAESHAFPLRDNSGGTSSSHVDFDESSFLNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELVRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3858 856 CDD B3_DNA 145 246 IPR003340 GO:0003677
Tpr1g3858 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 854 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr1g3858 856 Gene3D - 143 247 IPR015300 -
Tpr1g3858 856 ProSiteProfiles PB1 domain profile. 750 834 IPR000270 GO:0005515
Tpr1g3858 856 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr1g3858 856 SUPERFAMILY DNA-binding pseudobarrel domain 136 275 IPR015300 -
Tpr1g3858 856 SMART B3_2 146 248 IPR003340 GO:0003677
Tpr1g3858 856 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Tpr1g3858 856 SUPERFAMILY CAD & PB1 domains 751 829 - -
Tpr1g3858 856 Gene3D - 310 382 - -
Tpr1g3858 856 PANTHER AUXIN RESPONSE FACTOR 5 27 854 - -
Tpr1g3858 856 Pfam AUX/IAA family 747 837 IPR033389 -
Tpr1g3858 856 Gene3D - 746 839 - -
Tpr1g3858 856 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3858 Tpr-Chr1 42677339 42682963 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr1g3858 AUX_IAA 3.2e-11 CL0072