Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3848 ATGGAAGGTTTTGATCAAAGTGGTAATAATCAAAAAAATATTCATACATTTAGTTCTTCTTTAGGTGCATCTGCCAAACCCCCAATTAGGTTGAATTCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCATAAAAGTTCTGGTCTTGGTATACCACCTTCATATCCTAATACCAATACTAGTTTATCACCTAAACCTTCATCTCCTTATCCCCAATTTATAGGCTCACAATCCCAAAGTCATTCTAGGTCTTCATCTCAGCCAACTTTTTTCTCTCTTGATTCATTTTCCTTGCCTCCTTTGAGTCCTTCAGTTTACCCTCCTGTAAGTTCCAATCCTTTTTCTGATTCGGGTTCGAAAGATATTTCTATGGAGGAAAACTTTGGTGTCTCTCATGCACCTTCGCCTAGCCGCGGTCATGCTGTTCAACATGGTCTTTGTCTTCCCCCTCGTAAAGGGCATAGACGCTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTCGTTAACTCTGTCCCTCAGTTGGTGGGTGATCGTCGAAATTTGGTTTCTGGAGGAGAGAAATCGGGTTATGAGAAGCCGGTTCAGTTGGTGTTGAAGGGTAGGGATAGTGTTGATGGGTTTAGGGGAGAGATTTTTGATGGGAAGAAAGAGGATACAATGGATGATTTGTTTACTGCTTACATGAATTTGGAGAATATGCATAATATGAGTTTTTCCGGTATGGAAGATAGCAGAACTAGTGGTTCGAAGACTGTTGAAAGCAGTGATAATGAAGCTGAGAGTCATGTAAATGTAAAAGGAATAGGTGCTAAGGGTGCAAGTTCAAGCGGTTCAGATGAGAGGAGGGAAGGAGTCAAGAGAAATTCTAATGGAGATATTGCGCCGGGTAGTCGGCATAGGAGAAGTTTCTCATTGGACAGTTCTATTGGAAATTTTCAGTTTGAAGATGGATCGCCTAAGCTTCCTCCTTTACAAAGTCAAGCTGGTCAACACTCGCCAAGCAATTCAATGGATGGTTGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAAATCAAGAAAATAATGGAAAATGATAAGCTTGCTGAAATTGCCGCGTCTGATCCCAAGCGCGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCACAAGGTCCAAACTCTTCAGACAGAGACTACTACACTGTCTACTCAGTTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAATGCGAATAACGAGTACAAATTGAGGCTTCAATCCATGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAAACTTTGGATGCTGAAGTCCGGCGCTTAAGACGCACTGTAGCAGAACTAGGTGGAGAATCCCTCTTGTCGAGTCTCATGGCTCGACAGCTTGCTCTTAACCAACAAATGTTCCAATCACAGCATCAGCAACCTACCCAGCTTAGAAATTTTCAACCACAGAACAGCCAATCTCAGGAAGAAACACAGACTCAGTCACAGCAGCATATTCAACGCAATCATGAATTCCAATCCAAGCATCAGAATGGGAAAACTACTGCATAA 1647 0.4183 MEGFDQSGNNQKNIHTFSSSLGASAKPPIRLNSMPINQINQMGFPENHKSSGLGIPPSYPNTNTSLSPKPSSPYPQFIGSQSQSHSRSSSQPTFFSLDSFSLPPLSPSVYPPVSSNPFSDSGSKDISMEENFGVSHAPSPSRGHAVQHGLCLPPRKGHRRSSSDSPLGISEFVNSVPQLVGDRRNLVSGGEKSGYEKPVQLVLKGRDSVDGFRGEIFDGKKEDTMDDLFTAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESHVNVKGIGAKGASSSGSDERREGVKRNSNGDIAPGSRHRRSFSLDSSIGNFQFEDGSPKLPPLQSQAGQHSPSNSMDGCKTPEISMEFGNGEFSSQEIKKIMENDKLAEIAASDPKRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNANNEYKLRLQSMEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSLMARQLALNQQMFQSQHQQPTQLRNFQPQNSQSQEETQTQSQQHIQRNHEFQSKHQNGKTTA* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3848 548 SMART brlzneu 378 442 IPR004827 GO:0003700|GO:0006355
Tpr1g3848 548 Coils Coil 426 453 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 1 47 - -
Tpr1g3848 548 SUPERFAMILY Leucine zipper domain 382 438 IPR046347 GO:0003700|GO:0006355
Tpr1g3848 548 Coils Coil 398 418 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 245 307 - -
Tpr1g3848 548 Pfam bZIP transcription factor 382 440 IPR004827 GO:0003700|GO:0006355
Tpr1g3848 548 Coils Coil 461 481 - -
Tpr1g3848 548 PANTHER BZIP TRANSCRIPTION FACTOR 70 548 - -
Tpr1g3848 548 Gene3D - 379 442 - -
Tpr1g3848 548 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 70 548 - -
Tpr1g3848 548 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 380 443 IPR004827 GO:0003700|GO:0006355
Tpr1g3848 548 CDD bZIP_plant_RF2 383 455 IPR044759 GO:0003700|GO:0006355
Tpr1g3848 548 MobiDBLite consensus disorder prediction 498 533 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 54 93 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 498 548 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 1 93 - -
Tpr1g3848 548 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3848 Tpr-Chr1 42534239 42538672 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tpr1g3848 bZIP_1 5.9e-10 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3848 1 42534239 42538672 Tpr1g3848 1 42534239 42538672 ECH