Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3839 ATGGAAGATTTGAGGTTAGGGACAACGAAGAAGAAGAAGAGATCTAAACCGATTGAAATTGGTTTTGATTCTGATAATGATGAACCAATTGGTTCATTGCTTAAGTTTAAGAAGAATAAGAAGGCTGAGAATTCTAGGGTTCTTGATGATAATGATACTTTGGCTAGTTTTAGGAAGAGGTTGAAGGGTCCAAAGAGAGATCATGGATCTGAAACTGTGTCTGCTTTGAATGTTTCTGTTGAGGGTTGTGATGATGATGGTTTGGTTGAAGGAGGATCTGGGAGGAAGGATGAGGAAGGGGTGGATTTAGGTGTTGGTGATGATGACATGCAGGTGCATCATTCTTCTGATCAGCATATGGAAGAATCGTTGTCTATGATATTTAATAAGTCACAATCTAGTTCTGTTAAGAAATCTAGGGCTGGGTTAGGTTCAAAGAAGAAAAGAGGGAATCAGAATGTGGATAGTGGGTTGGAACATGGATGCAATAGTTTGACAGAAAATGTTGATTCTGTGATTGAAAGTAGATCTGGATCTGCTTTTGTGTTGAAATCGGTTGAGAGGAATCATGAATCTGATATGTTTTGTTCAGTATCTGCAATGGACGATCAAAAGGGCAGTGATGACTATTTTCAAGAGGAGAAGGTGAAGGGTATTTGTGATTCAAACAATCCAGATGGGTTGTCGTTTGATCACTCTAAACGAATCATTGACTGCGATGGAGATAGGCAGCAATTGTCAAGTGTACATGTCAAAGATGTTTGTGGCGCTTCTGACGAAAAGGTTGCATTGCAGGAAAGAATGCTAGATAATAGTTTGAATCAGCGTTCTGCCATGTTACAAGATGTTGAAATAATTGATACTGCCTCTCCATCTAAACTGGGGGAAAGGGTATGTGGATTTTCCGAGACTGGAGAGCTTGAGAATAAGTTAACCGATGAAATAGCAGAAAAACAAGTGTGTAATGGTGCTTCTGGAATGTTTTCCTCAATCAATGGAGGTATAAAATTGGAAGCTGAGTTTGTTTCTGGTCAAAATTGTTATGATTACAGTACATCAGATACAAATGCTGAAGTTCAAGATGTTGTTGTAGGCCGTTCACCTGAAAAACATGATGCAATTGTCAGTGGTTGTTTATCCTCTATTGTCCCTAACGGCGCCAATGAATCTGAATTTATTGTCCAGTCGAATCACCCAGACAAACCTTTGGAAATGTGTAATATTCCAAAAGACTCCACTGTTTCAATTCTGAAATGCAGCTCTGTGTTAGATCCAACTCAATCTGATGGATCCTCTATACAATCTTCAATTCCAGATGAAAATGGAAACATTGCAGAATATAATGCCTCTGTGTCTGATTTTACTGACAATGGTGGAAAGATATCAGGCATTCCTCGTGCACCACGAAAGACTAAAATGAATAAGCATGGCGACATGACTTATGAGGGTGATGCTGATTGGGAGATTTTAATAAATGATAAATCCCTAAATGAAAGCCAATATGGTGCTGATGGTGAACCTACTCTTAGAACAAGAGGGAAGCAGGACTCCTCTTTGAATGCTGTTGAGGACTCTGAAAATGTTGCAGTAGCGGCAGTATCTGCTGGGCTGAAAGCTTGTGCAGTTGGTCCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGAAAAGGTGGTCTCAAGGAATATTTAGATTGCAGGAATCAGATCTTAAGCCTATGGAGCAGTGATGTTGCACGTATTTTGCCCCTTGCTGAATGTGGAGTTAGCGATATCCGTTCCGAGAATGAAAATCCTCGTACTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAGTTGCCTCTCAAAAGGTGAACGTTGAGAGCAGTGCAAGACACTGTTATAAACTTGTAAAAGAAAAAGGATTCGAGGAAAGTTCTACAGCTTCGTTGGCCGGCTCTGAAGATGGCGTTTCTTTTATTGTTGGTCAGGCTAAAATGTCATATGCTTCTATGGATGATAATGATGGTCTAGTAAAGGATTTTGAAGACCTGACAACTGAAGCTACAGAAGGCACCATGCTTGTTAATGAAGCGATGATGGATTCATCAAACATGGCACAACATGAAAGAAAAAATTATGATGACCTGGAAAATGTTGGGATTCAGGATGGCGACAGTGGAATTATACATTTCAATGCTAACAGTTCTGTTCCTTTGTTTAAGCTTCCCGATTGTAGATTGACTTCTCTTGTTGCTACAAAGCAAAACAATGAATCTAAATGTGTTAAACATGCCTTAGGTGATACTCTGCAGTCTGATTTAGAGACTAGAAAGAGAGTGATTATCATTGGTGCTGGCCCTGCTGGGCTAACTGCTGCTCGCCACTTGAATCGTCAGGGGTTTACTGTAACTGTGCTTGAGGCTAGGAATAGGATAGGAGGTCGGGTATTTACAGACCACTCATCTCTTTCTGTCCCTGTAGATCTTGGTGCTAGCATTATCACAGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCGTTGGTTTGCGCTCAGTTGGGCCTTGAATTGTCGGTGTTAAACAGCGACTGCCCACTTTATGACACAGTGACTGGACAAAAAGTTCCTGCAGATATGGATGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTACTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAAAATGTCTCTTGAAGACGGTTTAGAATACGCCCTTAAGATTCGCCGCACGGGACACTCTAAAGGCAGTGAAGAAACTAAGCAAAGTAATTCTGCAGATCGTCCATTTGATTCCAAAAGGGATGGTGCTATGGAACAAAATTTTGATGAGATTTTGGATCCTCGTGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTAGAGTATGGCTGTGCTGCTTTGCTTAAAGAAGTTTCTCTTCCTTATTGGAATCAAGACGACGTGTATGGAGGATTTGGGGGACCTCATTGTATGATCAAAGGAGGTTATAGCACTGTTGTTGAGTCTCTCGGGGAAGGGCTTGGTATTCACTTGAACCACGTCGTAACAAATGTGTCATATGGTATCAAGGAACCTAGCAAGAATAATAAAGTCAAAGTTTCTACATTGAATGGCAATGAGTTTTTTGGAGATGCTGTCCTCATTACTGTCCCACTTGGCTGTTTGAAGGCCAAAACTATACAGTTCTCCCCCTCTTTGCCGGAGTGGAAATGTTCTTCCATTCAGCGTCTTGGCTTTGGAGTTCTCAATAAAGTGATTTTGGAATTTCCTACTGTGTTTTGGGATGATGCGGTGGACTACTTTGGGGCAACAGCTGAGGAGAGAAGCAAAAGAGGTCACTGCTTCATGTTCTGGAATGTCAAGAAAACAGTAGGGGCTCCTGTCCTTATAGCATTAGTGGTTGGTAAGGCAGCCATTGATGGTCAAAGTTTAAGCTCTTCTGATCATGTGAACCATGCATTGAAGGTTCTTCGAAAACTCTTTGGGGAGGCTTCAGTTCCTGATCCTCTTGCGTATGTTGTGACCGATTGGGGCAGGGATCCCTATAGCTTTGGTGCTTACTCTTATGTTGCTGTTGGAGCATCAGGAGAAGATTATGATATCATAGGAAAACCAGTTGATAACTGCTTGTTTTTTGCTGGGGAAGCAACCTGCAAAGAGCACCCTGATACTGTTGGTGGTGCAATGATGAGCGGACTACGGGAGGCTGTTCGCATAATTGACATATTGAACACCGGGATTGATAATACTGCAGAGGTAGAGGCATTGGAAGTTGCACAGGGACAATTGGACACCGAAAGGAATGAAGTTAGGGACATAATAAAGAGACTTGATGCAGTTGAGCTTTCTAAATTGTATAAAAACTCTTTTGAGGGTGCTCCAATCTTAACCCGGGAAGCTTTATTAAGGGAAATGTTCCTCAATGTGAAAACCAATGCTGGGCGTTTGCATGTGGCCAAACAATTGCTAAGTCTTCCTGTTGGAAACTTGAAGTCCTTTGCTGGAAGTAAGGAGGGGCTAACTGTTCTCAACTCCTGGATACTGGACTCGATGGGCAAGGATGGTACCCAACTTTTGAGGCATTGTTTGCGTCTTCTTGTGCGTGTGTCGACTGATCTAGGTGCTGTACGCTTATCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGAGCTATAGCTAGTCAATTGGTCAATGTATGGCTTGAACTTTTCCGCAAGGAAAAAGCTTCAAATGGGGGATTGAAGTTATCAAGACAAGCAACTACTGTAGAATTGTCAAAGAGAAAATCTTTAAAGGATTCAGCCTTGGGAAAGCCTCCTCTAAGTATACATCAGGGTACCGTTGAGAATAAAGGAGGCTTGCTGAATCCTCTATCTGCCGGAAGCAATTCACCTTCCAACACACATGCGAAGAAATTGCACAGCAAACAAGGAAGACAACAATCAGCATGTGACTCGAGGCATGATGTCTGTTCTTCTAGGTCCCAAGGTTCAATAGACAAAATACCTACTAAGGAGGAAAATAATCACTATGCTATGTCTGAAGAAGAAAAGGCTGCTGTAGCTGCTGCAGAAGCTGCCCGTACTAAAGCAATTGCTGCTGCTAAGGCATATGCCTCTGCAGAAGCTAGGTGCAGTACACTGTTACAGCTACCGAAGATACCTTCATTCCATAAATTTGCTAGACGGGAACAGTATTCACAAAATGATGAGTGTGATAGTAGAAAAAAGTTGTCTGGTGGTTTTTTTGGAAGGCAAGATTGTGTTTCTGAGATCGATTCTAGGAATTGCAGAGTTAGGGACTGGTCTGTTGATTTTTCCACTGCTTGTGTTAATCTTGATAATTCTAAAATACCAGTTGACAACCTCTCACAAAGGAGTCATTCAAATGAGATCGCCAGCCATTTGAATTTTGGAGAGCGTTCAGGAGAAAGTGCTGCCGTGGACAGCAATCTATATACAAAAGCTTGGATCGACACAGCTGGTGATGGGGTAGTAAAAGACCATCTTGCCATAGAGAGATGGCAAGATCAAGCAGCTGAAGCTGATTCTTATTTTTCTAATCAAAGCATTCATTTGAAGGATGAGGAGGATTCAAATGCCTATTCAAGGTTACCCAGCTGGAAACATGATGGTGTAGCAAATGAAAGTTCTGTTTCCCAGGTTACTGTAAATAAGGAGGAGGCCAGCAAAGGTCATTCTCGAGGAGCAGATCATATTAAACAGGCTGTTGTTGACTATGTTGGATCACTACTTTTGCCCCTTTATAAGGCTAGGAAGCTAGACAAGGATGGATACAAGGCAATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCAACGGATGCAGAAAAAGCCATGACTGTTCGTGAGTTTCTAGATTTTAAGCGAAGGAATAAGATTCGCTCCTTTGTGGATATATTGATTGAGAGACATATGGCAACAAGACCGGGTAGAAAATCATAA 5550 0.4162 MEDLRLGTTKKKKRSKPIEIGFDSDNDEPIGSLLKFKKNKKAENSRVLDDNDTLASFRKRLKGPKRDHGSETVSALNVSVEGCDDDGLVEGGSGRKDEEGVDLGVGDDDMQVHHSSDQHMEESLSMIFNKSQSSSVKKSRAGLGSKKKRGNQNVDSGLEHGCNSLTENVDSVIESRSGSAFVLKSVERNHESDMFCSVSAMDDQKGSDDYFQEEKVKGICDSNNPDGLSFDHSKRIIDCDGDRQQLSSVHVKDVCGASDEKVALQERMLDNSLNQRSAMLQDVEIIDTASPSKLGERVCGFSETGELENKLTDEIAEKQVCNGASGMFSSINGGIKLEAEFVSGQNCYDYSTSDTNAEVQDVVVGRSPEKHDAIVSGCLSSIVPNGANESEFIVQSNHPDKPLEMCNIPKDSTVSILKCSSVLDPTQSDGSSIQSSIPDENGNIAEYNASVSDFTDNGGKISGIPRAPRKTKMNKHGDMTYEGDADWEILINDKSLNESQYGADGEPTLRTRGKQDSSLNAVEDSENVAVAAVSAGLKACAVGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSSDVARILPLAECGVSDIRSENENPRTSLIREVYAFLDQYGYINVGVASQKVNVESSARHCYKLVKEKGFEESSTASLAGSEDGVSFIVGQAKMSYASMDDNDGLVKDFEDLTTEATEGTMLVNEAMMDSSNMAQHERKNYDDLENVGIQDGDSGIIHFNANSSVPLFKLPDCRLTSLVATKQNNESKCVKHALGDTLQSDLETRKRVIIIGAGPAGLTAARHLNRQGFTVTVLEARNRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELSVLNSDCPLYDTVTGQKVPADMDEALEAEYNSLLDDMVLVVAQKGEQAMKMSLEDGLEYALKIRRTGHSKGSEETKQSNSADRPFDSKRDGAMEQNFDEILDPRERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGPHCMIKGGYSTVVESLGEGLGIHLNHVVTNVSYGIKEPSKNNKVKVSTLNGNEFFGDAVLITVPLGCLKAKTIQFSPSLPEWKCSSIQRLGFGVLNKVILEFPTVFWDDAVDYFGATAEERSKRGHCFMFWNVKKTVGAPVLIALVVGKAAIDGQSLSSSDHVNHALKVLRKLFGEASVPDPLAYVVTDWGRDPYSFGAYSYVAVGASGEDYDIIGKPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGIDNTAEVEALEVAQGQLDTERNEVRDIIKRLDAVELSKLYKNSFEGAPILTREALLREMFLNVKTNAGRLHVAKQLLSLPVGNLKSFAGSKEGLTVLNSWILDSMGKDGTQLLRHCLRLLVRVSTDLGAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLELFRKEKASNGGLKLSRQATTVELSKRKSLKDSALGKPPLSIHQGTVENKGGLLNPLSAGSNSPSNTHAKKLHSKQGRQQSACDSRHDVCSSRSQGSIDKIPTKEENNHYAMSEEEKAAVAAAEAARTKAIAAAKAYASAEARCSTLLQLPKIPSFHKFARREQYSQNDECDSRKKLSGGFFGRQDCVSEIDSRNCRVRDWSVDFSTACVNLDNSKIPVDNLSQRSHSNEIASHLNFGERSGESAAVDSNLYTKAWIDTAGDGVVKDHLAIERWQDQAAEADSYFSNQSIHLKDEEDSNAYSRLPSWKHDGVANESSVSQVTVNKEEASKGHSRGADHIKQAVVDYVGSLLLPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRRNKIRSFVDILIERHMATRPGRKS* 1850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3839 1849 Gene3D - 782 1257 IPR036188 -
Tpr1g3839 1849 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 456 1845 - -
Tpr1g3839 1849 Gene3D - 888 1214 - -
Tpr1g3839 1849 PRINTS Adrenodoxin reductase family signature 781 803 - -
Tpr1g3839 1849 PRINTS Adrenodoxin reductase family signature 804 817 - -
Tpr1g3839 1849 SUPERFAMILY FAD/NAD(P)-binding domain 778 1262 IPR036188 -
Tpr1g3839 1849 ProSiteProfiles SWIRM domain profile. 528 628 IPR007526 GO:0005515
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 1489 1526 - -
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 1 23 - -
Tpr1g3839 1849 Pfam Flavin containing amine oxidoreductase 790 1259 IPR002937 GO:0016491
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g3839 1849 SUPERFAMILY FAD-linked reductases, C-terminal domain 1097 1208 - -
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 931 952 - -
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 129 154 - -
Tpr1g3839 1849 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1356 1440 IPR035441 -
Tpr1g3839 1849 Pfam SWIRM domain 541 618 IPR007526 GO:0005515
Tpr1g3839 1849 Gene3D - 527 632 IPR036388 -
Tpr1g3839 1849 SUPERFAMILY Homeodomain-like 526 624 IPR009057 -
Tpr1g3839 1849 Coils Coil 1275 1295 - -
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 1454 1475 - -
Tpr1g3839 1849 MobiDBLite consensus disorder prediction 1489 1532 - -
Tpr1g3839 1849 PANTHER FLAVIN MONOAMINE OXIDASE 456 1845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3839 Tpr-Chr1 42416039 42425873 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Tpr1g3839 Amino_oxidase 4.9e-107 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3839 1 42416039 42425873 Tpr1g3839 1 42416039 42425873 ECH