Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3826 ATGGCAGGTTTCTTCTCTCTAAGTAGTGGAAGAGGAAAAGAAGAAGCAAGAGAACAACAACAAGAAGAAAATAACAATAATAATCAGTTTCATTTCAGAAACGAAGAGATCTACAACAAAGGCTTTGAGATATGGCCACAACAATCTTCTTTTCATCATCAACAACAGCATCAACAAAACATTAACAATTTCTACTCGTTCGGAGTTGGTAGTTCATCTCGAAGAAACGAAAACACCACCAGTAATAACTTACATGATGATGTTTCCGTTTCTTTTTCCGATGAATCGACGAGATTTGGATTAACTGTGATAAGGTCTGGTGGTGGTGGAGGCTTAACCGGTGGAGGGATGAACTGTCAAGACTGTGGTAACCAGGCTAAGAAAGATTGTCCTCATCTTAGATGTAGGACTTGTTGTAAGAGTAGAGGGTTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCTGCTGCTAAACGACGTGAGCGACAACAACAGCTCACGTCGTTGCAGCAGCAAAACCAGCAACATCAGTTTCACTCGTCAAGAAGACACAGAGAAAATCAAAACGATCCTACTACTGGAGGAGCTTCTGGTTCTCTTGCCGGTAGTCCAATACCTATCACTACAACAGGGTTGGAGCTGGGAAATTTTCCACCGGAGCTGAATTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAATGGATGCACAAGATGAGCGTTACGCGTATCAAACGGCTGTGAACATAGGAGGAAGAGTTTTCAAGGGAATTTTGTATGATCAAGGACTTGAAGGTAATTATACTAGTGCAAATGCTGCTGGTGGTGGTGAGGGTTCTTCTGGTGGTGGTGGCGGCGGCGGTAGTGGTGAAGGAAATCTACAAAATTTGATTACAACTACCACAACAAATGTTAGTAATCCTTTTGAGTATTCATCACTCTATCCAGCTCCATTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1008 0.4286 MAGFFSLSSGRGKEEAREQQQEENNNNNQFHFRNEEIYNKGFEIWPQQSSFHHQQQHQQNINNFYSFGVGSSSRRNENTTSNNLHDDVSVSFSDESTRFGLTVIRSGGGGGLTGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQHQFHSSRRHRENQNDPTTGGASGSLAGSPIPITTTGLELGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSANAAGGGEGSSGGGGGGGSGEGNLQNLITTTTTNVSNPFEYSSLYPAPLNAFMAGTQFFPPPRS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3826 335 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 333 - -
Tpr1g3826 335 Pfam Domain of unknown function (DUF702) 116 266 - -
Tpr1g3826 335 MobiDBLite consensus disorder prediction 160 203 - -
Tpr1g3826 335 MobiDBLite consensus disorder prediction 162 178 - -
Tpr1g3826 335 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g3826 335 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 118 160 IPR006510 -
Tpr1g3826 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 333 IPR007818 GO:0003700|GO:0006355
Tpr1g3826 335 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 218 265 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3826 Tpr-Chr1 42265885 42268619 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr1g3826 DUF702 2.9e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3826 1 42265885 42268619 Tpr3g2360 3 22379930 22382092 ECH
Tpr1g3826 1 42265885 42268619 Tpr1g3826 1 42265885 42268619 ECH
Tpr1g3826 1 42265885 42268619 Tpr7g0263 7 2170400 2172568 PCT