Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3825 ATGGATCGCCGTTTCCTCTTAGCCCTTTTCCTCTTCGCCGCCGTAGCAACCGCCACAACCGACGACACCACCTCCGACGATCTTATCATCCGTCAAGTCGTCGATAACGCAGAAGATCACTTACTAAACGCAGAACATCACTTCTCTTCCTTCAAGTCAAAGTTCAGCAAAAGCTACGCAACACAAGAGGAACACGATTACCGATTCGGAGTTTTCAAATCGAATATCATCAAAGCTAAGCTTCATCAGAAGCTTGATCCTTCCGCTGAACACGGAATCACTAAATTTTCCGATTTAACGGCGTCTGAGTTCCGTCAGTTTCTTGGACTTAAGAAAGGTCTCCGTTTACCTGCTCACGCTCAGAAAGCTCCGATCCTCCCTACCAACAACCTTCCAGAAGATTTCGATTGGCGCGAGAAAGGCGCTGTTACTCCGGTCAAGAATCAGGGTTCTTGCGGTTCATGTTGGGCGTTTAGTACAACCGGAGCGTTGGAAGGAGCACACTATTTGGCTACTGGAAAGCTAGAGAGTCTTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGATCCAGAGGAATATAACTCGTGTGACTCGGGCTGTAATGGTGGATTGATGAACAATGCTTTTGAATACATACTCCAGTCTGGAGGAGTAGTGGCAGAAAAGGATTATCCTTACACCGGAAGAGATGGCACTTGCAAATTTGACAAAAGCAAGGTTGTTTCTTCCGTATCTAATTTTAGTGTGGTTTCTCTAGATGAAGAGCAAATTGCTGCAAATCTAGTAAAGAATGGCCCCCTTGCAATTGGTATTAATGCTGCCTGGATGCAGACCTATATGAGTGGTGTCTCATGCCCATACATCTGTGCCAAAGGACGTTTGGATCATGGGGTTCTTCTAGTTGGTTTTGGAAAAGCCGGTTATGCTCCCATTCGATTGAAGGAAAAGCCTTATTGGATCATCAAGAATTCATGGGGGGAGAACTGGGGAGAGGAGGGATATTACAAGATCTGCAGAGGCCGAAATGTATGTGGAGTGGATTCGATGGTCTCAACTGTAGCTGCAGCTCAAATCAACCATTGA 1089 0.4591 MDRRFLLALFLFAAVATATTDDTTSDDLIIRQVVDNAEDHLLNAEHHFSSFKSKFSKSYATQEEHDYRFGVFKSNIIKAKLHQKLDPSAEHGITKFSDLTASEFRQFLGLKKGLRLPAHAQKAPILPTNNLPEDFDWREKGAVTPVKNQGSCGSCWAFSTTGALEGAHYLATGKLESLSEQQLVDCDHVCDPEEYNSCDSGCNGGLMNNAFEYILQSGGVVAEKDYPYTGRDGTCKFDKSKVVSSVSNFSVVSLDEEQIAANLVKNGPLAIGINAAWMQTYMSGVSCPYICAKGRLDHGVLLVGFGKAGYAPIRLKEKPYWIIKNSWGENWGEEGYYKICRGRNVCGVDSMVSTVAAAQINH* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3825 362 SMART pept_c1 131 356 IPR000668 GO:0006508|GO:0008234
Tpr1g3825 362 CDD Peptidase_C1A 132 355 IPR039417 -
Tpr1g3825 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Tpr1g3825 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Tpr1g3825 362 SMART Inhibitor_I29_2 48 104 IPR013201 -
Tpr1g3825 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Tpr1g3825 362 Gene3D Cysteine proteinases 17 356 - -
Tpr1g3825 362 SUPERFAMILY Cysteine proteinases 43 354 IPR038765 -
Tpr1g3825 362 Pfam Papain family cysteine protease 131 354 IPR000668 GO:0006508|GO:0008234
Tpr1g3825 362 PANTHER CYSTEINE PROTEASE RD19C-RELATED 30 357 - -
Tpr1g3825 362 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Tpr1g3825 362 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Tpr1g3825 362 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Tpr1g3825 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 357 - -
Tpr1g3825 362 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3825 Tpr-Chr1 42248514 42251341 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3825 1 42248514 42251341 Tpr1g3825 1 42248514 42251341 ECH