Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3823 ATGATGAAATCAGGTATGGGAATTGAAGAGAGAAAACAGCTTAAAAAACCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCTGAAAATGCAAGCTGCACCTACAAAGGTGTGAGGCAGAGAACATGGGGCAAATGGGTTGCTGAAATTCGTGAACCAAACCGTGGTGCACGTCTTTGGCTTGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATACTGCAGCTCGTAAACTTTATGGTGCTGAAGCAAAACTCAACCTTCCAGAACTTTCTACACCTTATGTTCATTCCCCTAAAAAAAAATCATCATCCTCTGCGACAATAACACAAACACCTCATATGCAACAACCACAAATAATTAACCACAAGCCCATTAAAACCAACTTCAATTTTACATCACTCAATTCTTGCAACAACACCAACAACAACATTCACAATCACAATGCCAACAACAACTCTGTTTTTGTGTCTCTGCCATCTCAACAAATTGGTGATATTGCACCACCAATATATGACAGTATTCCAATTATGTCACTTCCAATGGAAGAACAAATTGAACAAATCAGCCTTCAGGGCGACGACTTGTCTTTTCAATATGATAATTCAAATGGTACGGTGGAAAGTAATAATGATTTGTGTTTTCAATATGATTATTCAGAGGGTATGATGGAAAGTAATAATCAGAATGATTCATTTTTTGGAACATTGAATTATGAAACCATGCCAGTGGTTGATGATGATTCAATTTGGAAAGAAGCTGCTATGTCTTTAGATTCTGCTCTTTCAATGGATTTTCAAATCATAGCTGATGCTGATGGAATTTATAATTCAGGTGCAAATTTTGGTGAAGTTGGTGCTTTGGATTCTCTACAAACTCCATGGTGCATGTAA 915 0.3749 MMKSGMGIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGAEAKLNLPELSTPYVHSPKKKSSSSATITQTPHMQQPQIINHKPIKTNFNFTSLNSCNNTNNNIHNHNANNNSVFVSLPSQQIGDIAPPIYDSIPIMSLPMEEQIEQISLQGDDLSFQYDNSNGTVESNNDLCFQYDYSEGMMESNNQNDSFFGTLNYETMPVVDDDSIWKEAAMSLDSALSMDFQIIADADGIYNSGANFGEVGALDSLQTPWCM* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3823 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 285 - -
Tpr1g3823 304 MobiDBLite consensus disorder prediction 102 124 - -
Tpr1g3823 304 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Tpr1g3823 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 285 - -
Tpr1g3823 304 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g3823 304 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Tpr1g3823 304 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Tpr1g3823 304 MobiDBLite consensus disorder prediction 104 124 - -
Tpr1g3823 304 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3823 Tpr-Chr1 42217192 42218688 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g3823 AP2 7.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3823 1 42217192 42218688 Tpr1g3823 1 42217192 42218688 ECH
Tpr1g3823 1 42217192 42218688 Tpr7g0268 7 2210509 2211204 PCT