Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3820 ATGGAAACCAACTCAGTTTCCAAGCTTCTTTCACTGTTCTTCACTATCTTCTTTCTTGGTTCTGAGTATATTCAATGTAGTGTTACATATGATAGAAAAGCTATTCTCATCAATGGACAAAGAAGAATCCTCATTTCGGGTTCCATTCATTATCCAAGAAGCACCCCAGAAATGTGGGAGGATCTGATTCAGAAAGCTAAAGATGGAGGGTTAGATGTTATTGACACTTATGTGTTTTGGAATGTTCATGAACCTTCTCCTAGTAATTACAATTTTGAAGGAAGGTACGATCTAGTACATTTCATAAAGACAGTGCAGAAAGTGGGTCTGTATGTACATCTTAGAATTGGACCTTATGTTTGTGCTGAGTGGAACTTTGGTGGATTTCCTGTTTGGTTGAAGTATGTTCCTGGAATCAGTTTCAGAACAGATAATGGCCCTTTTAAGGCTGCAATGGAAGGTTTTACTCAGAAGATTGTTCAGATGATGAAGAATGAAAAGCTATTTCAGTCACAAGGTGGTCCAATAATTCTTTCTCAAATTGAGAATGAGTATGGCCCACAAGGAAGAGCACTTGGAGCTACTGGTCGTGCATATTCAAATTGGGCTGCAAAAATGGCTGTTGGATTTGGTACAGGTGTCCCTTGGGTGATGTGTCTGGAAGATGATGCTCCAGATCCAGTGATAAATGCTTGCAATGGTTTTTACTGTGACAATTTCATTCCCAATAAACCATACAAGCCTAAACTATGGACTGAGTCTTGGAGTGGCTGGTTTTCAGAATTTGGCGGACCGGTTCCCCAGCGACCGGTTCAGGATTTAGCGTTTGCAGTTGCTCGTTTTATACAAAAGGGTGGCTCTCTTTTTAATTATTACATGTACCACGGAGGAACTAATTTTGGACGATCAGCTGGAGGACCATTCATAACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGTTAAGGGAACCTAAATATGGTCATTTGAAAGACCTTCATAAAGCTATCAAGCAATGTGAACATGCTTTGGTTTCTTCAGATCCTAAGGTTACATCATTAGGAGCATATGAACAGGCATATGTATTCTCTACAAGAACAACTTGTGCAGCTTTTCTAGCTAACTATCATTCAAATTCTGCTGCAAAAGTGACCTTCAACAATAGGCACTACGACTTACCTGCTTGGTCGATAAGCATCCTCCCTGATTGTAGAACAGATGTTTTCAACACTGCAAGAGTGAGGCTTCAACCTTCACAAATACAAATGCTTCCTAGTAATTCTAAATTGCTCTCATGGGAGACCTATGATGAAGATGTATCTTCACTTGCGGAGAATTCTAAAATCACAGCTTCTGGACTTCTAGAACAGCTAAATGCTACTAGAGACACTAGTGATTATCTGTGGTACATAACCAGTATTGACATAAGTCCATCGGAATCATTTCTTCGTGGAAGGAACAAGCCTAGTATTAGTGTGCACTCCTCTGGCGATGCCGTCCATGTGTTTATCAATGGGAAATTTTCAGGCTCGGCTTTTGGGACAAAGAAAAAGCCAAGTTTCAATTTTAACGGACCTATTGACCTACGAGCTGGAACTAATAAAATAGCACTTCTAAGTGTAGCTGTTGGATTACCTAATGGCGGAATCCATTTTGAGTCACGGAAGACAGGAATCACAGGTCCAGTTTTTCTCCATGGTCTTGACCATGCACAGAAAGATTTGACAGGGCAGAAATGGTCATACCAGGTTGGCCTAAAAGGAGAAGCTGTGAATTTGGTGTCTCCTAATGGCGTCTCATCTGTTGATTGGGTGCGAACATCGCTAGCTTCTCAAAACCGGCCACAGTTGAAATGGCACAAGGCTTATTTCAATGCACCTAATGGAATTGAACCATTGGCATTGGACATGAGCAGTATGGGAAAGGGTCAAGTATGGATCAATGGACAAAGCATCGGAAGATATTGGATGGTTTATGCAAAGGGTAAATGTAATGGTTGTAACTATGCCGGAACATATCGTCAGGGGAAGTGCCAAATTGGTTGCGGACAACCTACCCAACGATGGTACCATGTTCCTAGGTCCTGGTTAAAGCCAACAAATAACTTGCTGGTCGTTTTCGAGGAATTAGGAGGGAATCCTTGGAAAATATCTCTGGTAAAGAGGATAGTGCATACTCCACGAGTTAGTGAATCAAATTTAATGACTAATACTACACAAGAATGA 2235 0.4085 METNSVSKLLSLFFTIFFLGSEYIQCSVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIQKAKDGGLDVIDTYVFWNVHEPSPSNYNFEGRYDLVHFIKTVQKVGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMEGFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGPQGRALGATGRAYSNWAAKMAVGFGTGVPWVMCLEDDAPDPVINACNGFYCDNFIPNKPYKPKLWTESWSGWFSEFGGPVPQRPVQDLAFAVARFIQKGGSLFNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLLREPKYGHLKDLHKAIKQCEHALVSSDPKVTSLGAYEQAYVFSTRTTCAAFLANYHSNSAAKVTFNNRHYDLPAWSISILPDCRTDVFNTARVRLQPSQIQMLPSNSKLLSWETYDEDVSSLAENSKITASGLLEQLNATRDTSDYLWYITSIDISPSESFLRGRNKPSISVHSSGDAVHVFINGKFSGSAFGTKKKPSFNFNGPIDLRAGTNKIALLSVAVGLPNGGIHFESRKTGITGPVFLHGLDHAQKDLTGQKWSYQVGLKGEAVNLVSPNGVSSVDWVRTSLASQNRPQLKWHKAYFNAPNGIEPLALDMSSMGKGQVWINGQSIGRYWMVYAKGKCNGCNYAGTYRQGKCQIGCGQPTQRWYHVPRSWLKPTNNLLVVFEELGGNPWKISLVKRIVHTPRVSESNLMTNTTQE* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3820 744 SUPERFAMILY Galactose-binding domain-like 401 572 IPR008979 -
Tpr1g3820 744 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Tpr1g3820 744 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Tpr1g3820 744 Pfam Beta-sandwich domain in beta galactosidase 347 417 IPR041392 -
Tpr1g3820 744 SUPERFAMILY Galactose-binding domain-like 582 731 IPR008979 -
Tpr1g3820 744 Gene3D - 441 583 - -
Tpr1g3820 744 Gene3D - 595 731 - -
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 PANTHER BETA-GALACTOSIDASE RELATED 3 732 IPR001944 GO:0004553|GO:0005975
Tpr1g3820 744 Gene3D Glycosidases 20 291 - -
Tpr1g3820 744 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Tpr1g3820 744 Gene3D - 292 415 - -
Tpr1g3820 744 PANTHER BETA-GALACTOSIDASE 3 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3820 Tpr-Chr1 42189668 42195890 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3820 1 42189668 42195890 Tpr4g4231 4 49438536 49445046 ECH
Tpr1g3820 1 42189668 42195890 Tpr1g3820 1 42189668 42195890 ECH