Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3813 ATGTATCCGAACCAAGCATTTTCTTCGGGATCTTATGCTGAGATGATTTCCGGGAATACTTTGTTACCTCATAACTACAGTGAATCTATAGGAGGACAAAATGAGTTGAAGTTTATGACATCTATGAGCGACACAATGAATATGCAGCATATCAATGAGGGTCATTCTAATGATGCTACGAGCGATCCAAGGACACAATTTGGACTCGTTGAGAGCGAGCAAAATGTGCAATTGCAAGGCTTGTCTCTTAGCCTTGGGACAATGATGCCTTCATTTCAATATCAGTATCCTGGCAACGGTTTCACCTCGCTAATGAATGCTCAAATTTCAAACTTAAAGGAATCTGCATCTCTTAAAGATGACGAGGAATTGAGAAATGCTGAGTGCATTGCATCTTTGTCTTCTGGAGGATTTCACAACACTATCAAAAGGGAGGGTTTGTATAATCCACAACACCACTCAATAGGCCTTAATGAAGGTCAATCTGATCCGTGCCTCCACGGATCAGCGGTTATTCCGAACAATTCCCTTAACTCACATTACCTTAAGGCAGCCCAGGAATTGCTTGATGAAATAGTTAATGTCCGAAAGGGATTGAAACAAACTGGATCGGAAAAACAACAAAGTTTCCGTGACGCTGGTTTAGATGGTTCCAAAGATTCTGATGGAAAATCTACAAGTCAATCTATGCAAATATCTCCCGGACCTAATGGTTCTAATGCAAACAACCCTTCATGTGAGCTATCACCCGCCGAACGACAACATTTGTTGGACAAGAAAACAAAACTTTTGGCCATGTTGGATGAGGTAGACAAAAGATACCGACAATACTGTCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGTTGTGGATCTGCTGAACCATACACTGCTCTTGCTTTGCGCACTATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTAGGAGAACAAGAGGGAATACCCCGTCTCCGGTATGTGGATCAACAGCTTAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGGGGACTTCCCGAAAGCTCTGTTTCAATACTCCGTGCGTGGCTCTTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGTTGGCAAGACAAACTGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCGAGGGTGCGTCTTTGGAAACCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGCAATCTTTTATCAGAAAACACACTGAAAGCTCCGAGAGACGATGATGTTCGAGTGTGTGATGATAAAAGGGAAGAATCACAGGACAAGTTAACAACTACTGATAGTGTTCAACAAGGTCAAATTGCAGGATTGAAGTTGGATCATGCATCCTCCTCCACCACCGCCGCGACAGAATTCGATAGAGGGATTCAAAGTAATGATCATTGGGCAAATATGATGGATTCTAGAATTGGGAAAATGCAGGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCTATCTCAATCAACCAAAATGTTGATGGTTGCATAATGGATTCTACTCCTACTACTTATGATGATTTATCAGAGTTGAGTAACTTTGGTGTCGGTGGCCATGTCTCACTTGCATTAGAGTTGAGGAATTCTGAGAGTGATGGATTTGGTTTGTCGAATGATGACATCAATAAAAGGCGGAACCAAGCATTGGCTTCTTCATCAGATACCGATTTGTTAGATTATCATTTCACAGACAATGGAAAGCAACAACACAAGTTTGGCAACCCTCATTTATTACATGAGTTTGTTGTCTGA 1905 0.4184 MYPNQAFSSGSYAEMISGNTLLPHNYSESIGGQNELKFMTSMSDTMNMQHINEGHSNDATSDPRTQFGLVESEQNVQLQGLSLSLGTMMPSFQYQYPGNGFTSLMNAQISNLKESASLKDDEELRNAECIASLSSGGFHNTIKREGLYNPQHHSIGLNEGQSDPCLHGSAVIPNNSLNSHYLKAAQELLDEIVNVRKGLKQTGSEKQQSFRDAGLDGSKDSDGKSTSQSMQISPGPNGSNANNPSCELSPAERQHLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGSAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTLKAPRDDDVRVCDDKREESQDKLTTTDSVQQGQIAGLKLDHASSSTTAATEFDRGIQSNDHWANMMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNVDGCIMDSTPTTYDDLSELSNFGVGGHVSLALELRNSESDGFGLSNDDINKRRNQALASSSDTDLLDYHFTDNGKQQHKFGNPHLLHEFVV* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3813 634 MobiDBLite consensus disorder prediction 220 243 - -
Tpr1g3813 634 MobiDBLite consensus disorder prediction 431 455 - -
Tpr1g3813 634 Pfam Associated with HOX 178 320 IPR006563 -
Tpr1g3813 634 Coils Coil 182 202 - -
Tpr1g3813 634 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Tpr1g3813 634 Gene3D - 359 437 - -
Tpr1g3813 634 SUPERFAMILY Homeodomain-like 363 429 IPR009057 -
Tpr1g3813 634 CDD homeodomain 362 423 IPR001356 GO:0003677
Tpr1g3813 634 SMART HOX_1 362 426 IPR001356 GO:0003677
Tpr1g3813 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 596 - -
Tpr1g3813 634 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 596 - -
Tpr1g3813 634 SMART prehox3 166 321 IPR006563 -
Tpr1g3813 634 MobiDBLite consensus disorder prediction 200 243 - -
Tpr1g3813 634 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3813 Tpr-Chr1 42132587 42137269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr1g3813 POX 2.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3813 1 42132587 42137269 Tpr1g3813 1 42132587 42137269 ECH
Tpr1g3813 1 42132587 42137269 Tpr7g0277 7 2265848 2268938 PCT
Tpr7g0276 7 2250906 2261987 Tpr1g3813 1 42132587 42137269 PCT