Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3810 ATGAAGACATGCACATGCCTTAACAGTTCAATTCAATTTCAACGACGCTATCTTCATCATTATCTAAACCTTACTTCATTTCCTATTCGCTATTTATCTTCATTACCTTTCTCTCTTAAAGCTATACCGCGTAACATTGAAGCTGAACTTTCTTCTTCAAACGACGCCGTTTTACCTCTAAACCAAAACACTCCGATTCAGTTTCAACCACCGCTACAAAACGAAGAAGCTCCACCTCCGACTCCGTTTGTTCTCTCCGATGAAGATAAAGTAGTTACTACTAAGCTTAAAAAGAAGAAAGAACAAAACGATGATAATAGTAGTAGCAACATCGATAACCGTTTCAAGCTCCGTAATGGAAAAGAGGTTTTTGAAGAGAAAGCTTATCTAGTTGGTGTTGAGCGAAAAGGTGAAGCTAGTGATTCTTTTGGTATAGAAGATTCTTTGAGTGAATTGGAACAGTTAGCTGATACTGCTGGATTATTGGTTGTTGCTTCTACTTATCAGAAGCTTGCTTCTCCAAACCCTAGGACGTACATTGGCTCCGGCAAAGTTTCTGAAATTAAGAGTGCAATTAATGCATTGGACGTTGAAACTGTGATATTTGATGATGAACTATCAGCTGGGCAACTGCGCAACCTGGAAAAAGTTTTTGGTGGAAATGTGAGAGTTTGTGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACATGAAGCATCTTTACAGGTTGCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAAAAGAAGTGGACAAGCGTATTTTGCGCGACCAAATTGCTGTTCTTAAAAAAGAGCTAGAAACTGTTAGGAAACATCGAAAGCAGTACCGTAATAGGCGTGTCTCAGTACCCGTGCCAGTGGTATCCTTGGTGGGTTACACAAATGCTGGTAAGAGTACGCTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAATTGTTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACCGTTGGTTTTATTCAGAAGTTGCCTACTACACTAGTTGCTGCCTTCAGAGCCACACTGGAGGAGATATCAGAGTCATCACTTTTGGTTCATGTGATTGATATCAGTCACCCCTTGGCTGAGCAACAGATAAATGCCGTTGACAAAGTCCTGTCAGAACTAGATGTGTCATCAATTCCAAGATTGATTGTCTGGAACAAGATTGATAAGGCTAGTGATCCCCAGAAAATCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTTTGCATATCTGCTTTAAGTGGTGATGGCGTACAAGAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACACCATGGTATGGGTGGAAGCTTTGTTACCATTCGAAAATGGGGATCTTCTCAGCACCATTCACAAGGTTGGAATGGTTGAGAAAACTGAATATACGGAGCAAGGGACATATATCAAGGCTCATGTACCCCTACGTTTTGCAAGATTGCTTACACCTATGAGGCAACTGTGTGTACCACGATCTTAA 1644 0.4082 MKTCTCLNSSIQFQRRYLHHYLNLTSFPIRYLSSLPFSLKAIPRNIEAELSSSNDAVLPLNQNTPIQFQPPLQNEEAPPPTPFVLSDEDKVVTTKLKKKKEQNDDNSSSNIDNRFKLRNGKEVFEEKAYLVGVERKGEASDSFGIEDSLSELEQLADTAGLLVVASTYQKLASPNPRTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKVFGGNVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQSGGGQVKGMGEKQKEVDKRILRDQIAVLKKELETVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVDKVLSELDVSSIPRLIVWNKIDKASDPQKIRLEAEKRDDVVCISALSGDGVQEFCNAVQDKLKDTMVWVEALLPFENGDLLSTIHKVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCVPRS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3810 547 CDD HflX 281 484 IPR030394 GO:0005525
Tpr1g3810 547 TIGRFAM GTP_HflX: GTP-binding protein HflX 128 483 IPR016496 GO:0005525
Tpr1g3810 547 PRINTS GTP1/OBG GTP-binding protein family signature 324 344 IPR006073 GO:0005525
Tpr1g3810 547 PRINTS GTP1/OBG GTP-binding protein family signature 391 409 IPR006073 GO:0005525
Tpr1g3810 547 Hamap GTPase HflX [hflX]. 149 513 IPR016496 GO:0005525
Tpr1g3810 547 Pfam 50S ribosome-binding GTPase 324 442 IPR006073 GO:0005525
Tpr1g3810 547 TIGRFAM small_GTP: small GTP-binding protein domain 323 479 IPR005225 GO:0005525
Tpr1g3810 547 Pfam HflX C-terminal domain 454 522 IPR045498 -
Tpr1g3810 547 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 322 488 IPR030394 GO:0005525
Tpr1g3810 547 PANTHER GTP-BINDING PROTEIN HFLX 99 532 IPR016496 GO:0005525
Tpr1g3810 547 Pfam GTP-binding GTPase Middle Region 238 316 IPR032305 -
Tpr1g3810 547 Pfam GTP-binding GTPase N-terminal 146 235 IPR025121 -
Tpr1g3810 547 Gene3D - 239 307 - -
Tpr1g3810 547 Coils Coil 288 315 - -
Tpr1g3810 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 495 IPR027417 -
Tpr1g3810 547 MobiDBLite consensus disorder prediction 94 113 - -
Tpr1g3810 547 PANTHER GTP-BINDING PROTEIN 6-RELATED 99 532 - -
Tpr1g3810 547 MobiDBLite consensus disorder prediction 61 87 - -
Tpr1g3810 547 Gene3D - 321 489 IPR027417 -
Tpr1g3810 547 Gene3D - 139 238 IPR042108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3810 Tpr-Chr1 42108755 42115102 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3810 1 42108755 42115102 Tpr1g3810 1 42108755 42115102 ECH