Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3798 ATGTCAGGTCCTCTTGATCGCTTCGCTCGTCCATGTTTTGAAGGTTTTTCTGGTCATCATGATGAAAGAAGGGAGAGAAAATCAGATTTTGAGAATTCGGAAGATGATCGGCGAACAAGAATTGGGAGTTTGAAAAAGAAAGCCATAAATGCTTCGAGTAAATTTAGGCATTCTCTTAGGAAGAAAAGCCGGAGAAAGAATGCAAGTCGGAGTAATTCACTTGCAATTGAGGACGTTCGAGATGTTAAGGAGTTACAAGCAGTGGATGGTTTTCGACATTTACTTATTTCAGATAATTTGTTGCCATCAAGACTTGATGACTATCATACATTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAGGCAAAGCAGATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACCGATACAATTATGGAGGATTTTGAGTTTAGCGAGCTGGACGAAGTCATGCAATACTATCCACATGGTTATCATGGTGTTGATAAGGAAGGAAGACCTATTTATATTGAGAGACTAGGTAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCATGGAAAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCAGTTAAGTTTCCTGCTTGTTCTATTGCTGCCAAGAGACATATAGATTCCAGTACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACTTCACAAAGACTGCACGGGAACTAATCATGCGGCTGCAGAAAATTGACGGTGATTACTATCCTGAAACACTATGCCGAATGTTTATAATCAATGCTGGTCCTGGTTTCAAGCTGCTTTGGAACACGGTGAAAACATTCATTGATCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAATAAGTTGTTTGAAATTATTGATGCCAGTGAGCTGCCAGAATTTCTTGGTGGCAGTTGTACTTGTATAGATCAAGGCGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGATCCTAACATTTTAAAGATGGTTCTCAATGGTGAAATACAATGTCCTAGACAAATAGTAACGATTTCTAATGATGAGGGGAGAGTGATTCAATGTGACAAGGCATCTTATCCAATGATAAGAAGTAGTGATACATCAACAGGAGAATCAGGGTCTGAAGTTGAAGATATCACTTCCCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGGTTGGCTGGTAGGGCTGGTCTTTCTGTCGGTTTCCCTGAGTATGATGAGTACGTTCCGATGGTTGACAAGACTGTCGATGTTGCATGGATGGAGAAACAAGTCACGACTCAAAACTCACATAGCACAACAGAAAAATATCAATTAAGGACTGGAGGATCGGATGGAAAACGTGCATATATATGGGCTATTATCATTGGCTTCTTTGTTGCCATTTTTACTTTTGCTCGTTCAATAGCATTTCGTATGACTAAGGGAATAAAGGAAAATGACTCCGACTGTGTCCAACCAATAAACAAGGAAGAATCTCGTCCCCCATCACCTGCTCCCACATCGACAAAGGAAGAACTTGTCCCGTCTGCTTTGAAACGCCTTTGTGAGCTTGAAGAGAAGGTTGAAATGCTGCAGTCAAAACCTAATGTAATGCCAGGTGAGAAAGAGGAGCTGCTGAATGCTGCTGTTTATCGCGTGGATGCCTTGGAAGCTGAATTGATCACTACAAAGAAGGCTTTATACGATGCTTTGATTAGACAAGAAGAACTTATGGCATACATAGACAGTCAGGAAAGAAGAAAATTCGAGAAAAGGAAGTTGTGCTGGTTTTGA 1857 0.4033 MSGPLDRFARPCFEGFSGHHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSRRKNASRSNSLAIEDVRDVKELQAVDGFRHLLISDNLLPSRLDDYHTLLRFLKARKFDIEKAKQMWANMIQWRKEYGTDTIMEDFEFSELDEVMQYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMERYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFTKTARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKINVLGNKFQNKLFEIIDASELPEFLGGSCTCIDQGGCMRSDKGPWQDPNILKMVLNGEIQCPRQIVTISNDEGRVIQCDKASYPMIRSSDTSTGESGSEVEDITSPKASGNYTNPRLTPVHEEARLAGRAGLSVGFPEYDEYVPMVDKTVDVAWMEKQVTTQNSHSTTEKYQLRTGGSDGKRAYIWAIIIGFFVAIFTFARSIAFRMTKGIKENDSDCVQPINKEESRPPSPAPTSTKEELVPSALKRLCELEEKVEMLQSKPNVMPGEKEELLNAAVYRVDALEAELITTKKALYDALIRQEELMAYIDSQERRKFEKRKLCWF* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3798 618 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Tpr1g3798 618 CDD SEC14 153 320 IPR001251 -
Tpr1g3798 618 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Tpr1g3798 618 SMART sec14_4 152 323 IPR001251 -
Tpr1g3798 618 Gene3D - 31 139 - -
Tpr1g3798 618 Gene3D - 140 351 IPR036865 -
Tpr1g3798 618 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
Tpr1g3798 618 Pfam CRAL/TRIO, N-terminal domain 109 131 IPR011074 -
Tpr1g3798 618 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Tpr1g3798 618 MobiDBLite consensus disorder prediction 19 43 - -
Tpr1g3798 618 MobiDBLite consensus disorder prediction 510 532 - -
Tpr1g3798 618 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 614 - -
Tpr1g3798 618 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 614 - -
Tpr1g3798 618 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Tpr1g3798 618 MobiDBLite consensus disorder prediction 379 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3798 Tpr-Chr1 42023299 42028321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3798 1 42023299 42028321 Tpr1g3798 1 42023299 42028321 ECH