Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3777 ATGAGTTTTGTTCGGAAGGAGAATGAAGAAGGAAGGGATTTGAAGAAGCCATTTCTACATACAGGAAGTTGGTATAGAATTGGTGAAAGAAGACAATCAAGTAGTTTTTTTGGGTCAACACAAGCTATTCGTGATTCTTCCATTTCTGTTATTGCTTGTGTTCTCATTGTTGCTTTGGGTCCTATTCAATTTGGTTTTACAGCAGGGTATACATCACCTACACAATCAGCAATCATCACTGATCTTGGTCTCTCAGTTTCAGAGTTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCTATGGTTGGAGCAATAGCTAGTGGTCAAATTGCTGAGTATATGGGGCGCAAAGGGTCTTTGATGATTGCATCTATTCCCAATATTATTGGCTGGTTGTTCATCTCATTTGCAAAAGATTCTTCTTTTCTCTACATGGGAAGATTGTTGGAAGGATTTGGCGTCGGAATAATATCTTACACGGTGCCGGTATATATAGCTGAGATATCGCCTCAAAACTTGAGGGGAGCTCTAGTTTCAGTTAACCAGCTTTCTGTCACCATTGGAATTATGTTGGCTTATTTGCTAGGACTTTTTGTTCAATGGAGATACCTTGCAATTATAGGAATTATACCTTGTACATTATTGATACCTGGTTTATTCTTCATTCCCGAGTCTCCAAGATGGCTAGCAAAAATGGGAATGACAGAAGAATTTGAAAATTCCTTACAAGTACTCAGAGGTTTTGAAACTGATATTTCTTTAGAAGTCAATGAAATTAAGACTGCGGTTTCATCGTCAAGCAGAAGAACTACTGTTCGATTTGCCGAACTTAAGCAAAGAAGATATTGGCTTCCTTTAATGATTGGAATTGGACTTCTTGTTTTGCAACAACTTTCTGGGATTAATGGTGTTCTTTTTTATTCCAGTACTATCTTTCAAAATGCTGGAATTAGTTCGAGTGACGCAGCTACATTTGGAGTTGGCGCTGTTCAGGTTCTTGCTACCACTTTAACTTTGTGGTTGGCAGACAAATCCGGTCGCCGGCTTCTACTTATTGTTTCTGCATCTGGAATGACTTTGAGTCTTTTAGTTGTTTCGATCGCATTCTACTTGAAGGATTATATTTCACCAGATTCTTCTTTATATGGGATATTGAGCCTCTTGTCTATGGGTGGAGTTGTGGTCATGGTTATTGCATTCTCTTTGGGAATGGGAGCTATGCCATGGATTATAATGTCTGAGATTCTTCCGATTAACATCAAAGGCCTTGCTGGAAGTTTTGCAACACTTGCCAATTGGTTCTTTTCCTGGCTGGTTACATTGACAGCAAATTTGCTCTTGGATTGGAGTTCTGGAGGAACCTTCACAATATATACAGTTGTATGTGCTTTCACAGTAGGATTTGTTGCTATTTGGGTTCCTGAGACGAAGGGAAAAACTCTTGAAGAAATCCAACAGTTTTTCAGATGA 1470 0.3898 MSFVRKENEEGRDLKKPFLHTGSWYRIGERRQSSSFFGSTQAIRDSSISVIACVLIVALGPIQFGFTAGYTSPTQSAIITDLGLSVSEFSLFGSLSNVGAMVGAIASGQIAEYMGRKGSLMIASIPNIIGWLFISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEISPQNLRGALVSVNQLSVTIGIMLAYLLGLFVQWRYLAIIGIIPCTLLIPGLFFIPESPRWLAKMGMTEEFENSLQVLRGFETDISLEVNEIKTAVSSSSRRTTVRFAELKQRRYWLPLMIGIGLLVLQQLSGINGVLFYSSTIFQNAGISSSDAATFGVGAVQVLATTLTLWLADKSGRRLLLIVSASGMTLSLLVVSIAFYLKDYISPDSSLYGILSLLSMGGVVVMVIAFSLGMGAMPWIIMSEILPINIKGLAGSFATLANWFFSWLVTLTANLLLDWSSGGTFTIYTVVCAFTVGFVAIWVPETKGKTLEEIQQFFR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3777 489 CDD MFS_GLUT6_8_Class3_like 51 483 IPR044775 GO:0008643|GO:0051119
Tpr1g3777 489 PRINTS Sugar transporter signature 61 71 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 PRINTS Sugar transporter signature 144 163 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 SUPERFAMILY MFS general substrate transporter 54 485 IPR036259 -
Tpr1g3777 489 Gene3D MFS general substrate transporter like domains 43 489 IPR036259 -
Tpr1g3777 489 TIGRFAM SP: MFS transporter, sugar porter (SP) family 44 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr1g3777 489 Pfam Sugar (and other) transporter 54 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tpr1g3777 489 ProSiteProfiles Major facilitator superfamily (MFS) profile. 53 477 IPR020846 GO:0022857
Tpr1g3777 489 ProSitePatterns Sugar transport proteins signature 2. 149 174 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tpr1g3777 489 PANTHER - 15 487 - -
Tpr1g3777 489 PANTHER SUGAR TRANSPORTER ERD6-LIKE 6 15 487 - -
Tpr1g3777 489 ProSitePatterns Sugar transport proteins signature 1. 107 124 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3777 Tpr-Chr1 41858715 41862857 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3777 1 41858715 41862857 Tpr1g3777 1 41858715 41862857 ECH