Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3738 ATGAATCAAGTTGTGTTTAACTTCATTTTATTCACACTAAGCATTCTTCTTTCATCAAAAACCAAGGCACAACAAAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATGATACGGGACCTTCACCGGCATTTCTTTACACCTGCAATGGCCTCAACAGATCATGCTTGGCCTTTCTCACCTTCAAATCCAATCCTCCTTATAACTCTGTTGCCACAATTTCCAACCTCACATCATCGAATCCGAATGAGCTAGCCAGAATCAACCGCGCTACTTTGGTTACAGTTTTCCCACCTGGTAAAGAGGTTATTGTTCCTGTCAACTGTTCTTGTTTAACCAAGGATTATTACCAAGCTGAAACCAAATATATGTTGGGTCTAAACCCAACATATTTCATAATAGCAAATGACACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCATATGGGGAACTTGATTTGCATAAAGGAATAGAGTTGAATGTGCCACTCCGATGCGCTTGTCCAACGTATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCTACAAGATTCAATGTAACAGTAGGTAATCTAATTGATGCCAATGGTTTTTCCACAGAGACTCAACTCCTTTTTCCATTCACAACTGTTCTGATTCCTTTGGCAAGTGAACCAGTGAATTTAAAAACCATAGTTGTTAATGATCCTCCACCACCACCCACCCCACCACCACCAACCTCTCTTGGTTGCAGCTTCAAAAAGTGCAAATCAAACAGGAAAGTACTCCTCATTGCTTTAACCACCTCAGTGCTGGTTCTGTGTGTCTTGTTTGTGCTGTTTATGTTTCTGTTTCTGCTCAGAAAGAGATCGGCAAGGTTCGTTAAGCGAGGAACACAATTTAACAATAAAAGAGAGCTGTTTTCTGAAGAGATCCGCGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAGGCGACTGAGAATTTTAGTCCAAAGAACATAATCAAAGGTTCTTTATTTCGCGGTGTATTCGGCAATGGCAAAGACGTGTTGGCTGTTAAAAGAATGAGAAGAGATGCTTCCACAGAAATCAATTTGCTGAAAAGGATCAATCATTTCAACTTGATAAAACTGCAAGGTTACTGTGAAAACAATGATTGCATATATCTTGTTTATGAATACATAGAAAATGGATCTTTAAGAGAATGGCTTAGCAAGAATAGGTCCATTGAACACCAAAGTTGGGAAAAGAGGATACAGATTGCATTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAGCAGTGGAAACGTTCTACTGAACAAAGATTTAAGGGCCAAGATAGCAAATTTTGCTCGTGCTGAAGAATCAAAAAGGATGATACCTTCTGGTTGTCCCACATCACATGCCGTAGGATCTGTCGGTTATTTGGCTCCCGAGTATCTCAAGGAAGGGGTAGTCAGTACCAAAATGGACATCTACGCCTTTGGAGTTGTGCTGTTGGAATTGATCACTGGCAAAGATTCTATTACCCTACAAGATGGAAGACAAGTAATGCTCTATGAAATCATAGAAAATATCGTTGGCAAAGAGAATGAAGAAGAGAAGGTGAGTTTGTTCATTGATCCTTGCCTCACTGAAAACTGTAGGAAAGCATGTGCACTGCAGCTAGTTAAACTGAGTCTAGCCTGCTTGATCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTAGTCTCTAGCTTACTGAAAATACAGGCAAATGATATGCAACAAAGAATATCCCCCATCATCAACAAAAGCGTAAGCCTGGAGAGGTGA 1926 0.4013 MNQVVFNFILFTLSILLSSKTKAQQNYSGNSILSCKNNDDTGPSPAFLYTCNGLNRSCLAFLTFKSNPPYNSVATISNLTSSNPNELARINRATLVTVFPPGKEVIVPVNCSCLTKDYYQAETKYMLGLNPTYFIIANDTFQGLSTCDSLMRANPYGELDLHKGIELNVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTVGNLIDANGFSTETQLLFPFTTVLIPLASEPVNLKTIVVNDPPPPPTPPPPTSLGCSFKKCKSNRKVLLIALTTSVLVLCVLFVLFMFLFLLRKRSARFVKRGTQFNNKRELFSEEIREEIAIIEHLSKVYSFEEIKEATENFSPKNIIKGSLFRGVFGNGKDVLAVKRMRRDASTEINLLKRINHFNLIKLQGYCENNDCIYLVYEYIENGSLREWLSKNRSIEHQSWEKRIQIALDIANGLQYLHNFTEPCYVHKDISSGNVLLNKDLRAKIANFARAEESKRMIPSGCPTSHAVGSVGYLAPEYLKEGVVSTKMDIYAFGVVLLELITGKDSITLQDGRQVMLYEIIENIVGKENEEEKVSLFIDPCLTENCRKACALQLVKLSLACLIQEPESRPNIEEVVSSLLKIQANDMQQRISPIINKSVSLER* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3738 641 Pfam LysM domain 191 235 IPR018392 -
Tpr1g3738 641 SUPERFAMILY LysM domain 189 235 IPR036779 -
Tpr1g3738 641 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 626 - -
Tpr1g3738 641 Gene3D LysM domain 177 245 IPR036779 -
Tpr1g3738 641 SMART LysM_2 190 235 IPR018392 -
Tpr1g3738 641 CDD LysM 190 234 IPR018392 -
Tpr1g3738 641 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 7 626 - -
Tpr1g3738 641 Gene3D Transferase(Phosphotransferase) domain 1 418 637 - -
Tpr1g3738 641 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Tpr1g3738 641 Pfam Protein tyrosine and serine/threonine kinase 380 617 IPR001245 GO:0004672|GO:0006468
Tpr1g3738 641 SUPERFAMILY Protein kinase-like (PK-like) 342 630 IPR011009 -
Tpr1g3738 641 ProSiteProfiles Protein kinase domain profile. 352 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3738 641 ProSitePatterns Tyrosine protein kinases specific active-site signature. 463 475 IPR008266 GO:0004672|GO:0006468
Tpr1g3738 641 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3738 Tpr-Chr1 41484248 41486173 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr1g3738 PK_Tyr_Ser-Thr 1.6e-36 CL0016