Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3737 ATGGGGTGGCTTAGTAAAATTTTTAAAGGCTCTGACCAAAAGGTTTCAGAAGGACATTACTATAAAGACGATTCGAGTTATTACTTGCCGTCGACTTCAGGGGATGTTTGGGCTGAGAACGAGAATGAAGATATCGATCGTGCTATTGCATTGTCTCTAGCAGAAGACACTCCTAAAGCAAAAAAAGTTAAAGACCACAAATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATGTGGAGTCACCTCCCAAACATGGAAATGATATTAATATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATGTTGAGATTGGTTATGGACGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTTCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACATCCGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGAGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGTTTAGAGTGTCTTGATTCTTCTATCATGGATACTAACGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTACGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCCCTACTGTTGGTGGAAAGACAAGCACTGAACGAAGCAAGGGAAGGAGAGAAAAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCTGAGGAACTCAGCACTATTTCAAGACGACCTAGACTTGGGACAGGAAGTAAAGCAATGGGCATGAGAACACAACCATACAAAGTGACTGCTCGATGTGATGTTACAGCAATTCTCATTCTATATGGTCTTCCAAGATTACTTACCGGATCAATTCTAGCACATGAGATGATGCATGCATGGCTGCGGCTATCAGGTTTTCGGACTCTTAGTCAAGACGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTTCATCAGGAAGCAATTTTGTATCAGGCTCATCCTCATCTGCATCATATACATCTAAGAAAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCAGTTTATGGTGATGGATTTAGGGCAGGTCAAAAAGCGGTTCGCAAGTATGGCCTACAAAGAACCCTTCACCATATCAAGATGACGGGGAGTTTCCCATATGAAGTATAG 1425 0.4295 MGWLSKIFKGSDQKVSEGHYYKDDSSYYLPSTSGDVWAENENEDIDRAIALSLAEDTPKAKKVKDHKSQLEEDEQLARAIEESLNVESPPKHGNDINMYQPIQYFPMGYRICAGCNVEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSSIMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGSKAMGMRTQPYKVTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLSGFRTLSQDVEEGICQVLAHMWLESELSSSSGSNFVSGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGSFPYEV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3737 474 SMART uim 71 90 IPR003903 -
Tpr1g3737 474 SMART uim 40 59 IPR003903 -
Tpr1g3737 474 PANTHER PROTEIN DA1-LIKE 1 472 - -
Tpr1g3737 474 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Tpr1g3737 474 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Tpr1g3737 474 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Tpr1g3737 474 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Tpr1g3737 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Tpr1g3737 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
Tpr1g3737 474 Coils Coil 63 83 - -
Tpr1g3737 474 PANTHER PROTEIN DA1-RELATED 2 1 472 IPR045218 -
Tpr1g3737 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 200 - -
Tpr1g3737 474 SMART lim_4 111 163 IPR001781 -
Tpr1g3737 474 CDD LIM_DA1 112 164 - -
Tpr1g3737 474 Pfam Protein DA1 262 467 IPR022087 -
Tpr1g3737 474 Pfam LIM domain 112 166 IPR001781 -
Tpr1g3737 474 Gene3D Cysteine Rich Protein 108 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3737 Tpr-Chr1 41478400 41483875 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g3737 DA1-like 3.7e-95 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3737 1 41478400 41483875 Tpr1g3737 1 41478400 41483875 ECH