Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3731 ATGGCGAAATCCAGCGCCGACGATGTTGAACTCCGGCGAGCTTGCGAGTCTGCAATTGAAGATCCTAAACAGAAGATCATCTTATCACTTCGTGTTGCCAAGAGTCACGGGATCTTAGGAAAATCTTCTAAGCTTGGTCGTCAAATGGCCAAGCCTAGGGTTCTTGCTCTATCCACATTAACAAAGGGTCAGACGACTACAGCTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTGGAACCTGCAAAACTATACAAGCTAAGGCATCTCTCAAAAGTAGAAGTTTTAACAAACGATCCCAGTGGATGTACATTTACACTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCGCAATGGTCAATGCGCAATATTGATGACAGGAATCGTCTCCTTCTTTGTATCTTGACCATCTGTAAAGATGTTTTGGGTCGCCTTCCTAAGGTCGTCGGTATAGATGTTGTGGAGATGGCTCTCTGGGCTAAGGAAAATAGAGCCCCTGTTTCTACTCAGAATAATGTGCAAGATGGTGGTCCTGTTGCTTCCGCTATGATTGAGAGAGAGTCGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATTGGTGTTGGTGAAGCAGAAGAATTTTCTGATAGACTGAAGAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCACGCCATTTTAGAAAGTGAGCCTTTGATAAATGAGGTGTTGTATGGGCTTGAAGCAGCAACAAATTGTGTAGAAGATATGGATGAATGGTTAGGCACATTCAATGTTAAACTCCGGCACATGAGGGAGGATATTGCATCAATAGAAACCCGTAATAACAGCTTGCAAATGCAATCGGTAAATAACAAATCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCAACATGTTTGACAGGAGGTTCGTTTGATGAAGATCGGATGCTTCAAAATGTAGAAGCATGTGAATGGCTGACTAGTGCCTTGCGTGGTCTTGATGTGCCCAATATTGACCCTACTTATGCAAGCATGAGAGCTGTTAAAGAGAAGCGGGCAGAACTTGAAAAATTAAAATCCACTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGAGGACAGCTGAAGAGGCCTGATCATGCTGACTTGCGGTACAAATGCAGGACATATGCACGTCTTCTTCAGCATTTGAAGAGTCTCGACAAGAATTGCTTGGGTCCACTAAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCCGCGAGGCCCGGGAGTTCGCAAACGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCAACTGGTTCTGGTCAGAATGTAAATGCTACTGATACTTCTACAGTCTCTGATGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTTGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCCACACTTGTTCCTCCAGGAGGTATTGTTAACGGAAATAAAGCTGGTTATGATGATGATGATGATTTGGGAATTATGGACATTGATGATAATGACGGAAAAAATTCTGATGAGCTTGCAGCTTTAAATGAATCGCTTCAGGATTTACTCGACGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCAATGCATGGAATAACAGAACGATATCTTTCTGGTCAAAAAGCTGATGCAGCAGGATTTGTACGTCTTTTGCTTGGCGACCTAGAGTCCCGGATCTCTATGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGATTTGCCACCCTTGCAACTCGTATGGAGCAGTACATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCCAAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACACGCCATATTAGCATGATTATATACTTCCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTAATGTTCACTGTTGCACCTGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGGAAAATGCTAAAATCCAGCTTATCTGGGATTGACAAGTCTATTAATGCGATGTATAAGAAACTACAGAAGAATTTGACTTCAGAAGAACTGTTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGACAAGTACGAAAGTTTTGCCCAACTTGTTGCTAAGATTTATCCTAATGAGACAATCCTATCTGTTGCAGAGATTAAAGAGCAGTTAGCTAACATGTAA 2643 0.4211 MAKSSADDVELRRACESAIEDPKQKIILSLRVAKSHGILGKSSKLGRQMAKPRVLALSTLTKGQTTTAFLRVLKYSTGGVLEPAKLYKLRHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWSMRNIDDRNRLLLCILTICKDVLGRLPKVVGIDVVEMALWAKENRAPVSTQNNVQDGGPVASAMIERESKVNVEKDLVSQAEEEDMEALLGTYVIGVGEAEEFSDRLKRELQALEAANVHAILESEPLINEVLYGLEAATNCVEDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDKLLERLRVPSEYATCLTGGSFDEDRMLQNVEACEWLTSALRGLDVPNIDPTYASMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGIVNGNKAGYDDDDDLGIMDIDDNDGKNSDELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYFQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGIDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETILSVAEIKEQLANM* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3731 880 PANTHER SEC3/SYNTAXIN-RELATED 1 880 - -
Tpr1g3731 880 Pfam Exocyst complex component Sec3 569 864 IPR019160 GO:0000145|GO:0006887
Tpr1g3731 880 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Tpr1g3731 880 Coils Coil 221 248 - -
Tpr1g3731 880 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Tpr1g3731 880 Coils Coil 281 318 - -
Tpr1g3731 880 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 880 - -
Tpr1g3731 880 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3731 Tpr-Chr1 41424463 41443784 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3731 1 41424463 41443784 Tpr1g3731 1 41424463 41443784 ECH
Tpr1g3731 1 41424463 41443784 Tpr7g0328 7 2651836 2671216 PCT