Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3721 ATGGAAACAAGAAGACAAAACAGTGGCGGTAGCAAATCTTGGCAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACACAATTTCTCACCACAGATTTTGAACAACAACTTGCACTTCCTAAAATGTTTTCAGACAATTTAAAAAAGTTGCCTGAATATGTGACCCTTAAAGGTCCTAGCGGAGTTATGTGGAATGTAGGGCTGACAACTAGAGATGATACCTTGTACTTCACGAACGGTTGGCAAGAATTCATGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTTTTTGAGGTTTTCATCTTTGATGGAGAAAGTAATTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGAGATGCTCAAACTGAACAAGGGGGTAACGAGGCAAAGGACACAAAAAACTCTGTTGAAGAATTTAATACTGCTTCGGATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCAGCATCTTAATAGTGGGAATGTTCATACCGAACAAGGGGGTTGCGAGGGAAAGGACACAAACAATTGTGTTGAAGAAGTCGACGCTGCTTCTAATGGTGGTGTCGAATGTTGTACACCTCTGAAATTTCGGTCTGTTAACAGTATAAGAACGCCATTAGTTGCACCTTCTAAAACTAGCAATGAGAAGACTCTTAATGCTGGTGTTGAATCTGCTTCCCCTGAACAGTTCATGGCTGATGCAGTAACTAAGACCGCACCTGTAGTGTTTCACTTCCATCGAACCGGAAAAAGGACCAAGAGGCCTTTTAATGAAGTTATGTCTACCCCGAGTAAGAGGAGAAAAGGATCACCAAAAGCAGCTAATTCTTGGCAGAGAGGACTAGATTGGCTGGCTTGTAACAAGGAACACTCAGAAGCAGACATCCTGTATAGAAATGGGAAGGAAGATGACCATTATATTCTCAGTGGAGCTTCACTCTCAACGCTATCGGCACGTGAGGAGAAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTCAAAATAATCAAAACGTTCAATGTCAGTGGGTCACAAATTCTGAATATACCTTATGAATTTTCGATGGCACATCTTCCAAACTGCAACATAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACTGTTAATTCTGTTACTAGAACTAGAGTACATACAAATCACACTCTATGTGGAGGATGGTTGGATTTTGTTCGGGATAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCATATCGCTGAGGTTGGAAAAGATGGGCTCTCCCAGATTGAAAAACTAGCTTCTAGCATGCTTAGTGCTAGATGTGACGTCGCTTGCCGTAAGACTTCCAGATATATGCCAAAGAATCCTAAAACCAACTCAATGTGCAGAAACAAAGTTGATAAAGTTGATCTATCAAATAAAAAGTTGTCAAAGATTGGTCAAGGAGCTGCTTTATCCATCTTAAAGAAATACGGTAGAGCTTCAAATACTTCGAAGAAGATGGGGATTTGCCCCAAGTCGAAAGCAGTTCATAAAAAGTTGGCTTTACGGAGGAAACATCGTGTTGAAAAAGATCAAAGCTCGCAGGCTAATGCTGGTGTGAGAAAGTTGTGTGCACTCAACGAACAAAGGGTAGCTGAAGCTTTTGGTTCTCCATTTCCTAATTTTGTGAAAGTCATGAAGAACTTCAATATCAGTGGATCATACACTTTGAAAATACCAAATTGGTTCTCTGTTGCACATCTTCCTGGCTGCAAAACAGAAGTTACGCTCCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCTGTCCCAGATGCTAAATTGAGAAAAAATTACACCCTTTGTGGGGGTTGGAACACTTTTGTTCGTGATAATGACATAAATATTGGCGACACGTGCATATTTGAGCTCGTTTCTCATTATGTGATGCAGGTTCATAAATGGGAATGTGAAACTTAA 2037 0.4011 METRRQNSGGSKSWQEDIYWTHFQFIHFTQFLTTDFEQQLALPKMFSDNLKKLPEYVTLKGPSGVMWNVGLTTRDDTLYFTNGWQEFMKDHSLKENDFLVFKYNGESLFEVFIFDGESNCEKAASYFVGKCGDAQTEQGGNEAKDTKNSVEEFNTASDGGVECGSPEKFQHLNSGNVHTEQGGCEGKDTNNCVEEVDAASNGGVECCTPLKFRSVNSIRTPLVAPSKTSNEKTLNAGVESASPEQFMADAVTKTAPVVFHFHRTGKRTKRPFNEVMSTPSKRRKGSPKAANSWQRGLDWLACNKEHSEADILYRNGKEDDHYILSGASLSTLSAREEKKIAQSFTSSFPYFVKIIKTFNVSGSQILNIPYEFSMAHLPNCNIKIILHNLKGEHWTVNSVTRTRVHTNHTLCGGWLDFVRDNGIKVGDVCIFELIRECELRVHIAEVGKDGLSQIEKLASSMLSARCDVACRKTSRYMPKNPKTNSMCRNKVDKVDLSNKKLSKIGQGAALSILKKYGRASNTSKKMGICPKSKAVHKKLALRRKHRVEKDQSSQANAGVRKLCALNEQRVAEAFGSPFPNFVKVMKNFNISGSYTLKIPNWFSVAHLPGCKTEVTLRNSRGECWTVNSVPDAKLRKNYTLCGGWNTFVRDNDINIGDTCIFELVSHYVMQVHKWECET* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3721 678 CDD B3_DNA 27 115 IPR003340 GO:0003677
Tpr1g3721 678 SMART B3_2 351 447 IPR003340 GO:0003677
Tpr1g3721 678 SMART B3_2 581 677 IPR003340 GO:0003677
Tpr1g3721 678 SMART B3_2 28 117 IPR003340 GO:0003677
Tpr1g3721 678 SUPERFAMILY DNA-binding pseudobarrel domain 23 115 IPR015300 -
Tpr1g3721 678 ProSiteProfiles B3 DNA-binding domain profile. 351 447 IPR003340 GO:0003677
Tpr1g3721 678 ProSiteProfiles B3 DNA-binding domain profile. 581 677 IPR003340 GO:0003677
Tpr1g3721 678 CDD B3_DNA 579 673 IPR003340 GO:0003677
Tpr1g3721 678 Pfam B3 DNA binding domain 351 443 IPR003340 GO:0003677
Tpr1g3721 678 Pfam B3 DNA binding domain 581 666 IPR003340 GO:0003677
Tpr1g3721 678 Pfam B3 DNA binding domain 37 112 IPR003340 GO:0003677
Tpr1g3721 678 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 487 673 - -
Tpr1g3721 678 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 11 456 - -
Tpr1g3721 678 Gene3D - 564 676 IPR015300 -
Tpr1g3721 678 Gene3D - 332 447 IPR015300 -
Tpr1g3721 678 SUPERFAMILY DNA-binding pseudobarrel domain 344 444 IPR015300 -
Tpr1g3721 678 Gene3D - 21 120 IPR015300 -
Tpr1g3721 678 CDD B3_DNA 349 443 IPR003340 GO:0003677
Tpr1g3721 678 ProSiteProfiles B3 DNA-binding domain profile. 25 117 IPR003340 GO:0003677
Tpr1g3721 678 SUPERFAMILY DNA-binding pseudobarrel domain 574 674 IPR015300 -
Tpr1g3721 678 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 456 IPR044837 -
Tpr1g3721 678 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 487 673 IPR044837 -
Tpr1g3721 678 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3721 Tpr-Chr1 41307734 41311686 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3721 B3 1.4e-12 CL0405