Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3719 ATGGTTGGAGTTGGAGGAACACAAATCTTTGGTGGAAGCAAATCATGGCAGGAAGATATTTACTGGACCCATTTCCAATTCATCCATTTCACTCAATTTCTCAGAACTGACTTTGAACAACATCTTGCACTTCCGAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCTGAAAATGCGACCCTTAAAGGTCCTAGTGGAGTGGTGTGGAATATAGGGCTGAAAACTAAAGATGATACTGTTTACTTCACTAATGGTTGGCAACAATTCTTGAAAGATCACTCTTTGGAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAAGTCTTAATCTTTGATGGAGAAAGCTTATGTGAGAAGGCATCTTCTTATTTTGTTGGAAAATGTGGACATCCTCAAACTGAACAAGGGGATAACAAGGCAAAGGAAACAAACAATTCTCTTGGAGAAATCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCGGCGTGTTAACAGTATACGAACACCATTACCTGTACCTTTTGAAACTACCAATGGAGAGACTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTGATGGCTGATGCACTCACTAAGACCACAACTATACAGTTTCCCTTCCAACCAACTGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGACTAAGAAGCGAGGGAGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGTGGCTTGTAACAAGGAACACTCAGAAACATCTAACCTGAATAGAAGTGGCAAGGAAGATGACCATTATATTCCTAGCGGCGGAGCTTCACTTTCAAGGTCATCAATATGTCATGAGAAAAAGATAGCTCAGTCATTTACCTCCACTTTTCCATATTTTGTTAAAATAATGAAATCATTCAATGTCGGCGGTTCACGTATTCTGAATGTACCGTCAAAATTTTCGAAAGTACATCTTCCAAACACCAAGATACAGATTATTCTTCATAATTTGAAGGGAGGACAGTGGATTGTTAATGCTGTTCCAACAACTAAATTGCATACAAGTCACACTATGTGTGGAGGATGGTTGGATTTTGTTCGTGGCAACGACATAAAGCTTGGAGATGTCTGCATTTTCGAACTGATAGGTAAGTGTGAGTTACGTGTTCGTATCGCTGAGGTCGGAAAAGATGGGCTAGAAGACTCCCAGATTGGAAAACAAGCTTCTAGTACGCTTGGTGCAAGACATGATGTCGTTCGCAATAAGACTTCGAGTTCGAGATATAAGCCAAAGAGTTCTAAATTCAGCTCAAAGTACAGAAAGAAAGTTGTTGCATCAGATAAAAAGTTGTCAAAGATTGGTCAAGAAGCTGTTTTGTCCATTGAGTTGAAAAAATCTGATGTTGGAAAGGAAGGTCTTGACAATCAAAATGGGCATATGAATGAGCCTTATTGGCAAAGGAAACAGACAATTCTGTTGAAGAAATCAATACTGCTTCTAATGGCGGTGTTGAATGTGGTTCGCCTGAGAAATATCGGCGTTAGTATACGAACACCATTAGTTGTATCTTTTGAAACTACCAATGAGACGACTTTTAATACTGGTGTTGAATCTGCGTCGCCAAAGCATTTCATGGCTGATGCAGTTGCTAAGACCACACCTACTGTTCAAGGCTTAAAGCTTCCACTGTTTTTTTTTTTACTAGAGCTTAAACCTCAACCATTTCAATCTCAGACTGTGTTCCAAATGGGAGGAGGAAGCAAATCTTGGCAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACACAATTTCTCACCACAGATTTTGAACAACAACTTGCACTTCCTAAAACATTTTCAGCCAATGTAAAGAATAAATTGCAAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTCTGTGGAATGTAGGGCTGACAACTAGAGACGACACCTTGTACTTCGCGAACGGTTGGCAAGAATTCATGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGTTTATGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTAGTAATGTTAAAGCTGAACAAGGGGGTAGCAAGGCAAAGGGCACAAACACTGCTACTGAAGAAGTCATTAATACTGCTTCTAACGGTGGTGTTGAATGTGGTTCACCTGTGAAATTTCAGCGTCTTAATAGTATAGGAACACCATTGGATGTACCTTTTGTAACTACCAACGAGACTGGTGTTGAATCTGCGTCCCCAGAGGAGTTCATAGCTGATTTCGTCACTAAGACCACACCTGTAGTGATTCCCTCCCAAAAAACCGGCAAAAGGACCAAGAGGCCTGTTAATGAAGTTATTCCTGAGCAGACTAAGAAGCGAGGAACAACACCGAAAGCAGCTAAGAAGCGAGGAACAACACCGAAAGCAGCTAATTCTAGTGAGAGAGTACTTGAGAAGGAACACTCAGAGGCAACCATTCCGTGTAGAAGTGGGAAGGAAGATGACCGTTATACTGTCCGCGGAGTTAAACTGTCAACGTTATCAACAGAACCTAACGAGAAAGAGATAGCCCAATCATATACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAATCGTTCAATGTTGGTGGTTCATGTTTGCTGAATATACCATCTCAATTTTCGAAAGCACATTTTCCAAACAAAGTAATAAAGATTATCCTACATAATTCGAAGGGAGAACAGTGGACTGTTAATTGTGTTAATAAATCTAGTGTGCATTATACACATCACATTTTCTGTGGAGGATGGATAGATTTTGTTCGTGGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTATGAATTACGTGTTCGTATTGCTGAGGTTGGAAAAGATGGACTAGACTTCAAGGATGAAAAACTAGATTCTTAG 3033 0.3976 MVGVGGTQIFGGSKSWQEDIYWTHFQFIHFTQFLRTDFEQHLALPKTFSNNVKKKLPENATLKGPSGVVWNIGLKTKDDTVYFTNGWQQFLKDHSLEENDFLVFKYNGESHFEVLIFDGESLCEKASSYFVGKCGHPQTEQGDNKAKETNNSLGEINTASNGGVECGSPEKFRRVNSIRTPLPVPFETTNGETFNAGVESASPEKLMADALTKTTTIQFPFQPTGKRTKKPVNEVTPTPVQTKKRGRRPFKAAHSCDLVACNKEHSETSNLNRSGKEDDHYIPSGGASLSRSSICHEKKIAQSFTSTFPYFVKIMKSFNVGGSRILNVPSKFSKVHLPNTKIQIILHNLKGGQWIVNAVPTTKLHTSHTMCGGWLDFVRGNDIKLGDVCIFELIGKCELRVRIAEVGKDGLEDSQIGKQASSTLGARHDVVRNKTSSSRYKPKSSKFSSKYRKKVVASDKKLSKIGQEAVLSIELKKSDVGKEGLDNQNGHMNEPYWQRKQTILLKKSILLLMAVLNVVRLRNIGVSIRTPLVVSFETTNETTFNTGVESASPKHFMADAVAKTTPTVQGLKLPLFFFLLELKPQPFQSQTVFQMGGGSKSWQEDIYWTHFQFIHFTQFLTTDFEQQLALPKTFSANVKNKLQENVTLKGPSGVLWNVGLTTRDDTLYFANGWQEFMKDHSLKENDFLVFKYNGESHFEVLIFDGESLCEKAASYFVGKCSNVKAEQGGSKAKGTNTATEEVINTASNGGVECGSPVKFQRLNSIGTPLDVPFVTTNETGVESASPEEFIADFVTKTTPVVIPSQKTGKRTKRPVNEVIPEQTKKRGTTPKAAKKRGTTPKAANSSERVLEKEHSEATIPCRSGKEDDRYTVRGVKLSTLSTEPNEKEIAQSYTSSFPYFVKIMKSFNVGGSCLLNIPSQFSKAHFPNKVIKIILHNSKGEQWTVNCVNKSSVHYTHHIFCGGWIDFVRGNGIKVGDVCIFELIREYELRVRIAEVGKDGLDFKDEKLDS* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3719 1010 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Tpr1g3719 1010 ProSiteProfiles B3 DNA-binding domain profile. 311 407 IPR003340 GO:0003677
Tpr1g3719 1010 CDD B3_DNA 29 118 IPR003340 GO:0003677
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 427 446 - -
Tpr1g3719 1010 CDD B3_DNA 615 704 IPR003340 GO:0003677
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 804 865 - -
Tpr1g3719 1010 CDD B3_DNA 898 993 IPR003340 GO:0003677
Tpr1g3719 1010 SUPERFAMILY DNA-binding pseudobarrel domain 895 993 IPR015300 -
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 427 444 - -
Tpr1g3719 1010 Gene3D - 295 407 IPR015300 -
Tpr1g3719 1010 Gene3D - 880 996 IPR015300 -
Tpr1g3719 1010 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 420 IPR044837 -
Tpr1g3719 1010 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 599 1006 IPR044837 -
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 225 240 - -
Tpr1g3719 1010 SUPERFAMILY DNA-binding pseudobarrel domain 611 704 IPR015300 -
Tpr1g3719 1010 CDD B3_DNA 309 403 IPR003340 GO:0003677
Tpr1g3719 1010 Pfam B3 DNA binding domain 900 992 IPR003340 GO:0003677
Tpr1g3719 1010 Pfam B3 DNA binding domain 311 403 IPR003340 GO:0003677
Tpr1g3719 1010 Pfam B3 DNA binding domain 39 118 IPR003340 GO:0003677
Tpr1g3719 1010 Pfam B3 DNA binding domain 625 704 IPR003340 GO:0003677
Tpr1g3719 1010 SUPERFAMILY DNA-binding pseudobarrel domain 304 404 IPR015300 -
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 846 865 - -
Tpr1g3719 1010 ProSiteProfiles B3 DNA-binding domain profile. 900 997 IPR003340 GO:0003677
Tpr1g3719 1010 ProSiteProfiles B3 DNA-binding domain profile. 613 706 IPR003340 GO:0003677
Tpr1g3719 1010 SUPERFAMILY DNA-binding pseudobarrel domain 26 118 IPR015300 -
Tpr1g3719 1010 MobiDBLite consensus disorder prediction 225 249 - -
Tpr1g3719 1010 Gene3D - 23 123 IPR015300 -
Tpr1g3719 1010 Gene3D - 609 709 IPR015300 -
Tpr1g3719 1010 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 599 1006 - -
Tpr1g3719 1010 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 13 420 - -
Tpr1g3719 1010 SMART B3_2 30 120 IPR003340 GO:0003677
Tpr1g3719 1010 SMART B3_2 900 997 IPR003340 GO:0003677
Tpr1g3719 1010 SMART B3_2 616 706 IPR003340 GO:0003677
Tpr1g3719 1010 SMART B3_2 311 407 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3719 Tpr-Chr1 41284149 41295467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3719 B3 3.6e-16 CL0405