Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3708 ATGCAACAATCAAACGGTTCTGATTCATCCACGCAACCGGAGACCAACAAACAACGGCAACATACACCGCAACCGGTTGCGCTACCACAACAGTGGGTTCCGATGCAGTATCCAACGGCGATGGTAATGCCACATCATATGATGCCACATCAGCATTACGCGCCGCCGCCTTATGTTCCTTATCATCACCATCATCACCACCAGTATCAGCAACCGTTGCACGTGCCACATCAGCAGCATCAGAATCATCAACAACAACAACAACAACATGGATCCAATGGTGAAAATAAGACTCTGTGGATTGGTGATTTACATAGCTGGATGGATGAAAATTATCTTCATCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCACAGTGGTATTTCAGAGGGTTATGGATTTGTGGAATTTTTTTCACATGCTACAGCTGAGAAAGTTTTACAGAATTATACTGGAATTTTGATGCCAAATGCTGAACAAATGTTCCGTTTGAACTGGGCTACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCGTATTGCATGAAACTTTTGCTAGTTCATATCCTTCTGTTAAAGCTGCAAAGGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTTGTCAGGTTTGGAGATGAAAACGAGAGATCTCAGGCCATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAGACATTCTCCCAGTATGGTGAGATAGCATCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTGCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAATGGGACAATGATCGGCAAGCAAACCGTTCGTCTCTCTTGGGGCCGCAATCCAGCAAATAAACAGCTTAGGTTTGATTTCGGAAGCTGGGCTGGGCCATATTTTCCATCCCCTATTTATGACGGATACGGATATGCAATGCCTTCTCCTCATCATGATCCAAGCACGTACCCTCTAGCTTATGGAGGTTACCCCATTTATGGAGGCCACCAACAACAAGTAAGCTGA 1278 0.4397 MQQSNGSDSSTQPETNKQRQHTPQPVALPQQWVPMQYPTAMVMPHHMMPHQHYAPPPYVPYHHHHHHQYQQPLHVPHQQHQNHQQQQQQHGSNGENKTLWIGDLHSWMDENYLHRCFASTGEISSIKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYTGILMPNAEQMFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFASSYPSVKAAKVVYDANTGRSKGYGFVRFGDENERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQLRFDFGSWAGPYFPSPIYDGYGYAMPSPHHDPSTYPLAYGGYPIYGGHQQQVS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3708 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Tpr1g3708 425 MobiDBLite consensus disorder prediction 267 291 - -
Tpr1g3708 425 MobiDBLite consensus disorder prediction 270 291 - -
Tpr1g3708 425 MobiDBLite consensus disorder prediction 63 94 - -
Tpr1g3708 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Tpr1g3708 425 SUPERFAMILY RNA-binding domain, RBD 191 368 IPR035979 GO:0003676
Tpr1g3708 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Tpr1g3708 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Tpr1g3708 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Tpr1g3708 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Tpr1g3708 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 165 IPR000504 GO:0003723
Tpr1g3708 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Tpr1g3708 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Tpr1g3708 425 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g3708 425 Gene3D - 59 187 IPR012677 -
Tpr1g3708 425 MobiDBLite consensus disorder prediction 72 94 - -
Tpr1g3708 425 CDD RRM2_SECp43_like 189 268 - -
Tpr1g3708 425 CDD RRM1_SECp43_like 98 178 - -
Tpr1g3708 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Tpr1g3708 425 Gene3D - 272 373 IPR012677 -
Tpr1g3708 425 Gene3D - 189 265 IPR012677 -
Tpr1g3708 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 424 - -
Tpr1g3708 425 SUPERFAMILY RNA-binding domain, RBD 59 178 IPR035979 GO:0003676
Tpr1g3708 425 MobiDBLite consensus disorder prediction 1 29 - -
Tpr1g3708 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3708 Tpr-Chr1 41186933 41195301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3708 99 375 Eukaryotic Initiation Factors Gene Family AT4G34110 28.723 3.57e-32 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3708 1 41186933 41195301 Tpr1g3708 1 41186933 41195301 ECH
Tpr1g3708 1 41186933 41195301 Tpr3g3446 3 38003167 38007198 PCT