Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3670 ATGGCTTTCCTTCAAGATCAGTTTCAACAACGTCACTATCAAAACCAGCAACAACAACAACAATCTCAGCCACAAACCAAATCTTTCAGAAATTTACGAACAATTGATGGTCAGATGTCACAGCAGATGGCTTTTTACAACCCTACTGATTTGCAAGATCAGTCTCAGCATCCACCTTACATTCCTCCATTTCATGTTGTTGGTTTTGCTCCTGGTCCTGTAATTCCTGCTGATGGAAGTGATGGTGGTGTTGATTTGCACTGGAATTTTGGTTTGGAACCGGAGAGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAATAATTCTCAGATATCTTCTGTGGATTTCCTGCAACCTCGATCTGTTTCAACGGGATTGGGATTGTCGCTTGATAATACCCGCTTGACTTCAACCGGAGACTCGGCTTTGCTGTCACTTATAGGGGACGACATTGATCGTGAGCTGCAACAGCAGGATTTAGAGATGGATAGATTTCTCAAACTGCAGGGTGAACAATTGCGGCAAACAATTTTAGAGAAAGTTCAGGCAACCCAACTTCAGAGTGTTTCAATCATTGAAGACAAGGTCCTCCAAAAACTTCGTGAGAAAGAAACCGAGGTGGAAAACATCAACAAGAGGAATATGGAACTCGAAGATCAAATGGAGCAGTTGAGTGTAGAAGCAGGCGCATGGCAACAGCGAGCCAGATACAACGAAAACATGATTGCTGCTCTCAAGTTTAACCTCCAACAAGCATACCTTCAAACTAGAGATAGTAAAGAAGGATGTGGTGACAGCGAGGTAGATGATACAGCTTCTTGCTGTAATGGTCGTTCGCTTGATTTTCATCTGCTCCCCAACGAAAATTCCAACATGCAAGACATGTTGAAATGCAAGGCTTGCAGAGTCAATGAAGTGACCATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGCGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTCATCGGCATGGAGGTCTATATGTAA 1035 0.4213 MAFLQDQFQQRHYQNQQQQQQSQPQTKSFRNLRTIDGQMSQQMAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVIPADGSDGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLTSTGDSALLSLIGDDIDRELQQQDLEMDRFLKLQGEQLRQTILEKVQATQLQSVSIIEDKVLQKLREKETEVENINKRNMELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQAYLQTRDSKEGCGDSEVDDTASCCNGRSLDFHLLPNENSNMQDMLKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3670 344 PANTHER F2G19.2 8 344 - -
Tpr1g3670 344 ProSiteProfiles Zinc finger RING-type profile. 298 333 IPR001841 -
Tpr1g3670 344 Coils Coil 193 234 - -
Tpr1g3670 344 PIRSF SBP1_RNase_bind 3 344 IPR017066 -
Tpr1g3670 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 344 IPR013083 -
Tpr1g3670 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 8 344 IPR017066 -
Tpr1g3670 344 Pfam Zinc finger, C3HC4 type (RING finger) 296 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3670 Tpr-Chr1 40848597 40851066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3670 298 334 Miscellaneous Gene Families AT4G39050 45.946 2.92e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3670 1 40848597 40851066 Tpr1g3670 1 40848597 40851066 ECH