Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3669 ATGGCTGGTTCTTCATCTGATGATATTATGCACCAAACACACCCATCATTGGTTCCTCCTGAATCACAAGATTTCTCAAATTTACTATTCAACCAACTCATGGATCCTTCTTCTTCTTCCTCATCTTTCAATTTCTCTGATCCTTTTCCTAATCCTTCCACAACCATCCCTTACCCTCCTTCTCATTTCACTTCTTCTTCAACTCAGAATGATGAAGCTTCAGAGTTGCCATCATCAAAGGCTACCCCACCACCACGGTCTTCTTCAAAGAGGAGTAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTAAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAACTTCAGCTTCAAGTACAAATGTTAATGGTGAGAAATGGATATAGCCTGCATCCAATGTCTTTATCAGGAGGACCGCGGCCTACAATGTTTTCTCAGACCGATTTGTTGAATCTTGATGAGAGTAATATTGGATTTCACAATTCTATCAATGCAAATGATGAATGTTTCACGCGGCCTGGTTTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTATTTTACCGTCGATGACAAATATAGCTAATTTTGATGCTTCATCAAGTTTTCAACCCTCTATTAAGGATGTTTTCTGCAACAATATGCCACAACTGATTTTGGATTCAACAAGGATTGGAAAAACTCCTTCTCCAGATGTGTCTTAA 792 0.3788 MAGSSSDDIMHQTHPSLVPPESQDFSNLLFNQLMDPSSSSSSFNFSDPFPNPSTTIPYPPSHFTSSSTQNDEASELPSSKATPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGPRPTMFSQTDLLNLDESNIGFHNSINANDECFTRPGFSFPEQCSISNQSVILPSMTNIANFDASSSFQPSIKDVFCNNMPQLILDSTRIGKTPSPDVS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3669 263 MobiDBLite consensus disorder prediction 1 51 - -
Tpr1g3669 263 Gene3D - 88 152 IPR036638 GO:0046983
Tpr1g3669 263 SMART finulus 99 148 IPR011598 GO:0046983
Tpr1g3669 263 MobiDBLite consensus disorder prediction 58 89 - -
Tpr1g3669 263 PANTHER TRANSCRIPTION FACTOR SPATULA 63 241 - -
Tpr1g3669 263 CDD bHLH_AtPIF_like 93 155 - -
Tpr1g3669 263 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
Tpr1g3669 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Tpr1g3669 263 MobiDBLite consensus disorder prediction 1 107 - -
Tpr1g3669 263 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 63 241 IPR031066 -
Tpr1g3669 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 153 IPR036638 GO:0046983
Tpr1g3669 263 MobiDBLite consensus disorder prediction 91 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3669 Tpr-Chr1 40843565 40845779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3669 93 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 84.722 2.00e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g3669 HLH 1.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3669 1 40843565 40845779 Tpr1g3669 1 40843565 40845779 ECH