Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3667 ATGGCGCAAATTCAGGTTCAACACCAGACTCCGGCACCCGTTCCTGCACCTTCGAACGGTGTTGCTCCGAACGCGAATCAGTTTGTGACGACGTCTTTGTACGTTGGTGATCTTGATTTGAATGTTAACGATTCTCAGCTTTACGATCTGTTTAATCAGGTTGGACAAGTTGTTTCTGTTAGGGTTTGTAGGGACTTGACTACGCGTCGTTCACTCGGTTATGGTTATGTTAATTTCACTAACCCTCAGGATGCGGCTAGGGCATTGGATGTGCTGAATTTTACCCCACTGAACAACAAATCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTATTCGGAAGAGTGGCGCTGCTAATATTTTTATCAAGAATTTGGATAAGACAATTGACCACAAAGCTTTACATGATACCTTTTCTACTTTCGGACATATTCTGTCTTGCAAGATAGCTACCGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGACTGCGGAATCTGCTCAGAGTGCAATTGACAAGTTAAATGGCATGCTGATCAATGACAAGCAGGTGTATGTGGGTCATTTCCTACGTAAGCAGGACAGAGATAATGATCTTACTAAAACAAAATTTAATAATGTCTATGTGAAAAACTTATCAGAGTCATTTTCGGAAGATGACTTGAAAAATACTTTTGGAGAGTACGGCACTATTACTAGTGCTGTTTTGATGAGGGATGCAGATGGTAGGTCGAAGTGTTTTGGTTTTGTCAATTTTGAAAGTCCTGAGGATGCTGCTAAAGCTGTTGAGGCATTGAATGGAAAGAAAGTTGATGACAAGGAGTGGTATGTGGGAAAAGCCCAGAAAAAATCTGAAAGGGAGCAAGAGCTGAAAGGTCGGTTTGAGCAGACTGTAAAGGAAACTGTAGACAAATATCAAGGGGTGAACCTTTATCTCAAGAACTTGGATGATTCCATTAGTGATGAAAAACTCAAAGAGATCTTCTCCGAGTTTGGCACAATTACCTCATACAAGATTATGCGCGACCCAAATGGTGTCAGCAGAGGATCTGGATTTGTTGCATTTTCAACTCCAGAGGAAGCATCAAGAGCTCTTGGAGAGATGAATGGCAAAATGATTGTCAGCAAACCTCTTTATGTTGCTGTTGCACAGAGAAAGGAAGATAGAAAAGCAAGGTTGCAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTTCACCTTCTGTTGCTCCCCGAATGCCACTCTACCCTCCTGGTGCTCCTGGTATTGGACAACAATTTATGTATGGTCAAGGACCCCCAGCCATGATGCCTCCTCCACAAGCTGGATTTGGATATCAGCAGCAACTTGTTCCTGGGATGAGACCTGGCGGTGGTCCAATGCCAAGCTACTTTGTTCCAATGGTTCAGCAGGGCCAACAAGGTCAGCGTCCTGGTGGACGCCGAGGTCCTGTTCAACAACCCCAGCAGCAACTGCCAATGATGCAGCAGCAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTCCTGGCCGCAACAACATTCAAGATGCCCCCGTGGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTGCCACTCCGTGATGTCTCGCCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCTGAACAGCAGAGGACTATGCTTGGAGAGGCTTTGTATCCACTAGTAGATCAGCTGGAACATGATTCTGCAGCTAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTTATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGAGAAACGTTGCTCAACAGCAAGGCAACAGCCCGGCAGATCAACTAGCTTCACTTTCTCTCAACGATAATCTATAA 1929 0.4505 MAQIQVQHQTPAPVPAPSNGVAPNANQFVTTSLYVGDLDLNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFTNPQDAARALDVLNFTPLNNKSIRVMYSHRDPSIRKSGAANIFIKNLDKTIDHKALHDTFSTFGHILSCKIATDGSGQSKGYGFVQFETAESAQSAIDKLNGMLINDKQVYVGHFLRKQDRDNDLTKTKFNNVYVKNLSESFSEDDLKNTFGEYGTITSAVLMRDADGRSKCFGFVNFESPEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKETVDKYQGVNLYLKNLDDSISDEKLKEIFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRKARLQAQFSQMRPVAISPSVAPRMPLYPPGAPGIGQQFMYGQGPPAMMPPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGPVQQPQQQLPMMQQQMLPRQRVYRYPPGRNNIQDAPVAGGMMSYDMGGLPLRDVSPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGNSPADQLASLSLNDNL* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3667 642 CDD RRM4_I_PABPs 312 390 - -
Tpr1g3667 642 CDD RRM2_I_PABPs 117 193 IPR045305 -
Tpr1g3667 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Tpr1g3667 642 Pfam Poly-adenylate binding protein, unique domain 554 618 IPR002004 GO:0003723
Tpr1g3667 642 Gene3D - 300 399 IPR012677 -
Tpr1g3667 642 Gene3D - 118 193 IPR012677 -
Tpr1g3667 642 SUPERFAMILY PABC (PABP) domain 495 636 IPR036053 GO:0003723
Tpr1g3667 642 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Tpr1g3667 642 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 619 IPR006515 GO:0003723
Tpr1g3667 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Tpr1g3667 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Tpr1g3667 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Tpr1g3667 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Tpr1g3667 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Tpr1g3667 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Tpr1g3667 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Tpr1g3667 642 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 623 IPR002004 GO:0003723
Tpr1g3667 642 Gene3D - 1 117 IPR012677 -
Tpr1g3667 642 Gene3D - 195 299 IPR012677 -
Tpr1g3667 642 PANTHER POLYADENYLATE-BINDING PROTEIN 20 628 - -
Tpr1g3667 642 CDD RRM1_I_PABPs 32 111 - -
Tpr1g3667 642 SMART rrm2_1 314 386 IPR003954 GO:0003676
Tpr1g3667 642 SMART rrm2_1 32 105 IPR003954 GO:0003676
Tpr1g3667 642 SMART rrm2_1 211 283 IPR003954 GO:0003676
Tpr1g3667 642 SMART rrm2_1 120 192 IPR003954 GO:0003676
Tpr1g3667 642 PANTHER RNA BINDING PROTEIN 20 628 - -
Tpr1g3667 642 SMART poly_2 558 621 IPR002004 GO:0003723
Tpr1g3667 642 Gene3D - 542 625 - -
Tpr1g3667 642 SUPERFAMILY RNA-binding domain, RBD 210 394 IPR035979 GO:0003676
Tpr1g3667 642 SMART rrm1_1 120 192 IPR000504 GO:0003723
Tpr1g3667 642 SMART rrm1_1 314 386 IPR000504 GO:0003723
Tpr1g3667 642 SMART rrm1_1 32 105 IPR000504 GO:0003723
Tpr1g3667 642 SMART rrm1_1 211 283 IPR000504 GO:0003723
Tpr1g3667 642 CDD RRM3_I_PABPs 209 288 - -
Tpr1g3667 642 MobiDBLite consensus disorder prediction 623 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3667 Tpr-Chr1 40816222 40820868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3667 1 639 Eukaryotic Initiation Factors Gene Family AT4G34110 69.565 0.0 876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3667 1 40816222 40820868 Tpr1g3667 1 40816222 40820868 ECH