Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3666 ATGAAGGTGCATCAATTCACACGTGGATTTTGGGAGCATCATGAACCTTCTCTTACACTTGGTTGCAAACGTTTACGCCCTCTTGCACCTAAATTTTCTAATAACACCGATAATTCTACTAATCACACCACCCCTTCTCTTTCTTTTGATCTCAAGACTTTCATTAAACCTGAAAGTGCTTCCACAATTAATCTTTCTTCCTCTGATCATGATAACAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACGCATATTCCAGGAGGGACAAGGTGGAATCCAACACAAGAACAAATAGGAATCTTGGAGATGTTATACAGAGGTGGAATGAGAACACCAAATGCACAACAAATAGAACAGATAACTGTTCAACTTAGCAAGTACGGTAAAATTGAAGGCAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGTCTTGTTCATAGTCCTCGTACTCCATCCACCACACTAGTGTCATCCACCTTTAGTTGCATTACAACTTTGGACACCCCCAAAAAGGAAGAAGTAATGGAAAGAGATCAAGGAGATGATAGTCCATTGAAGAAGAGTAGGAGTTGGCCATTTGAGTATTTAGAAGAGAAAAATTGGTCAATTTGCAAACAAGAGGAACATAAAACTCTAGAGCTTTTCCCATTACATCCGGAAGGCAGATGA 714 0.3992 MKVHQFTRGFWEHHEPSLTLGCKRLRPLAPKFSNNTDNSTNHTTPSLSFDLKTFIKPESASTINLSSSDHDNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLVHSPRTPSTTLVSSTFSCITTLDTPKKEEVMERDQGDDSPLKKSRSWPFEYLEEKNWSICKQEEHKTLELFPLHPEGR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3666 237 MobiDBLite consensus disorder prediction 62 95 - -
Tpr1g3666 237 MobiDBLite consensus disorder prediction 78 95 - -
Tpr1g3666 237 Gene3D - 90 157 - -
Tpr1g3666 237 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Tpr1g3666 237 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 237 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Tpr1g3666 237 SMART HOX_1 88 155 IPR001356 GO:0003677
Tpr1g3666 237 CDD homeodomain 91 152 IPR001356 GO:0003677
Tpr1g3666 237 SUPERFAMILY Homeodomain-like 90 157 IPR009057 -
Tpr1g3666 237 Pfam Homeodomain 91 150 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3666 Tpr-Chr1 40811948 40813978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3666 1 157 Wox Gene Family AT1G46480 63.415 2.91e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr1g3666 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3666 1 40811948 40813978 Tpr1g3666 1 40811948 40813978 ECH