Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3664 ATGAAAGAAGATAGGGAATATTATTGTTCGATGAATTCAAGAACAAATAATAATATCTCTATAGATAACAATAACAACAATAAAGAGATGAGAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGTAAATGGGTTGCAGAAATTAGAGAACCAAATAAAAGATCAAGAATTTGGTTAGGTTCTTATATAACACCTATTGCTGCCGCACGTGCCTATGACACAGCTGTGTTTTATCTTAGAGGTCCTTCTGCTCACCTTAATTTTCCAGAATTATTGTTCAAAGATCAAGAACATGAAGAAAATCAACAACAACGTGGGAATATGTCGGCTGATACAATAAGGAAAAAAGCTACTCAAGTTGGTGCTAGAGTTGATGCTCTTGAAATTCATGCTTCTTCAAATAATCATCATGTTCATGATGACTCCAATTCTTCTTCTTCTACTACTACTAATTCTCTCAAACCTGATTTGAATGAGTTTCCAAATCCTGAAGATTATTGA 522 0.3352 MKEDREYYCSMNSRTNNNISIDNNNNNKEMRKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSAHLNFPELLFKDQEHEENQQQRGNMSADTIRKKATQVGARVDALEIHASSNNHHVHDDSNSSSSTTTNSLKPDLNEFPNPEDY* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3664 173 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 MobiDBLite consensus disorder prediction 145 164 - -
Tpr1g3664 173 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 MobiDBLite consensus disorder prediction 136 173 - -
Tpr1g3664 173 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tpr1g3664 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 172 - -
Tpr1g3664 173 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Tpr1g3664 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 172 - -
Tpr1g3664 173 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3664 Tpr-Chr1 40769225 40770119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3664 34 172 AP2-EREBP Transcription Factor Family AT2G23340 56.944 3.33e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g3664 AP2 4.2e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3664 1 40769225 40770119 Tpr1g3664 1 40769225 40770119 ECH