Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3657 ATGGGTTCCACAACTCTATCACCATCCATGAAGCTCACGATCTTTCTCATCTTTCTAACTTTCACAGTTTCACTAGCCTTAGACATGTCAATCATTTCCTACGACAAAACTCACCCTGACAAATCAACCAAAAGAACCGATAACGAAGTGATGAACATGTACGAAGAGTGGTTAGTGAAACACGGAAAATCATACAACGGTTTAGGTGAGAAAGATAAGAGATTTGAGATCTTTAAAGACAACCTTAATTTCATCGATGAACATAACGGTTTGAATTTGAGTTATAAATTGGGGTTGAACCGGTTCGCCGATCTAACAAATGAAGAATTCCGAGCCAAGTTTTTGGGAACAAAAATGGATCCGAACCGGAGGATGAAGAAGGTGGGTGGTTCAAGAAACAATAGATATGCGCCACGTGTCGGTGATAAATTGCCTGAATCTGTTGATTGGAGAAAAGAAGGTGCTGTTGTTGGAGTCAAAGATCAAGGAGGCTGTGGGAGTTGTTGGGCATTCTCAGCAGTTGCTGCAGTAGAAGGAATAAATCAGATTGTGACAGGAGACCTAATTTCATTATCAGAACAAGAATTGGTGGACTGTGATACATCATACAATGAAGGATGCAATGGTGGACTTATGGACTACGCCTTCGAGTTCATCATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTATCGTGCTATTGATGGTAGATGTGACCAGAGCAGGAAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTGCCTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAATCAGCCTATTGCCGTTGCTATTGAAGGTGGCGGTAGGGAATTCCAGTTATATGAATCTGGAGTATTTACCGGTAGATGTGGAACAGCACTAGACCATGGTGTTGCAGCTGTTGGTTACGGCACAGCTAATGGTAAAGACTATTGGATTGTTAGGAATTCCTGGGGTAGTACCTGGGGAGAAGCCGGTTACATCAGACTTGAACGTAATCTAGCTTCAAGCAGATCAGGAAAGTGTGGAATTGCAATCGAGCCATCTTATCCAATTAAGAATGGAGAGAATCCCCCTAACCCGGGACCATCACCACCTTCACCTGTGAAGCCACCATCTGTCTGTGACAGTTACTATAGCTGTGCTGAAGGATCCACTTGTTGCTGTATTTATGAGTATGGAAAATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAATCCGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACATTTATGCTGGACTTTGTCTTAAGAGCAAGAACAACCCATTAGGAGTGAAGTTATTCAAACGAACTCCTGCCAAACCCAACTTGGCCATTGGAGGTAAGAACAAGATCAGCACCACTGCTTAA 1425 0.4295 MGSTTLSPSMKLTIFLIFLTFTVSLALDMSIISYDKTHPDKSTKRTDNEVMNMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLNFIDEHNGLNLSYKLGLNRFADLTNEEFRAKFLGTKMDPNRRMKKVGGSRNNRYAPRVGDKLPESVDWRKEGAVVGVKDQGGCGSCWAFSAVAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYRAIDGRCDQSRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAIEGGGREFQLYESGVFTGRCGTALDHGVAAVGYGTANGKDYWIVRNSWGSTWGEAGYIRLERNLASSRSGKCGIAIEPSYPIKNGENPPNPGPSPPSPVKPPSVCDSYYSCAEGSTCCCIYEYGKSCFEWGCCPLESATCCDDHYSCCPHEYPVCDIYAGLCLKSKNNPLGVKLFKRTPAKPNLAIGGKNKISTTA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3657 474 CDD Peptidase_C1A 145 359 IPR039417 -
Tpr1g3657 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Tpr1g3657 474 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Tpr1g3657 474 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508|GO:0008234
Tpr1g3657 474 PRINTS Papain cysteine protease (C1) family signature 319 325 IPR000668 GO:0006508|GO:0008234
Tpr1g3657 474 Gene3D Cysteine proteinases 27 362 - -
Tpr1g3657 474 Gene3D Granulin 380 443 IPR037277 -
Tpr1g3657 474 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 390 - -
Tpr1g3657 474 Pfam Granulin 394 441 IPR000118 -
Tpr1g3657 474 PANTHER CYSTEINE PROTEASE 34 390 - -
Tpr1g3657 474 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
Tpr1g3657 474 SUPERFAMILY Cysteine proteinases 46 360 IPR038765 -
Tpr1g3657 474 SMART GRAN_2 383 440 IPR000118 -
Tpr1g3657 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 319 338 IPR025661 -
Tpr1g3657 474 SMART pept_c1 144 360 IPR000668 GO:0006508|GO:0008234
Tpr1g3657 474 Pfam Papain family cysteine protease 144 360 IPR000668 GO:0006508|GO:0008234
Tpr1g3657 474 SUPERFAMILY Granulin repeat 380 414 - -
Tpr1g3657 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Tpr1g3657 474 SMART Inhibitor_I29_2 54 110 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3657 Tpr-Chr1 40700788 40704952 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3657 1 40700788 40704952 Tpr4g4001 4 46555813 46559596 ECH
Tpr1g3657 1 40700788 40704952 Tpr1g0409 1 3501976 3505053 ECH
Tpr1g3657 1 40700788 40704952 Tpr1g3657 1 40700788 40704952 ECH