Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3654 ATGGGCCAAGCAGCTTCCACGGCCACCGTCGCCGCTAACCGCCGGGAAAGCCTACAAGTTAACCGATCTATAAACTCCACAAAAACTAACAGATCTACTGCTTTGGTTTCGCCGATGGTCGCCGGTGAAGACGACGATGTTTTAGATCCAGTTAACGGTGACGGTGGCGGTGGCAGTGGAGTTGTAAACTCCGATTATATATCAGATCTACCTGACGAATGCTTAGCGATTGTGTTTCAGTCACTTTGTCCCGCTGATCGGAACCAGTGTTCACTCGTTTGCCGGCGGTGGTTTTACGTTGAAGGACAGAGTCGTCAACGACTTTCGTTAAACGCGAAACTCGATCTTCTTCCGGTAATTCCTTCTCTCTTTGATCGATTTGATTCAGTGACGAAATTAGCGCTTAAATGCGATCGTAGATCTGTTAGTATAAGAGATGAAGCTCTTGTTATAATCTCCGAGCGTTGCCCCAATCTCACGCGCCTTAAACTCCGCGCGTGTCGTGAACTTACTGATGCTGGAATGGAAGCTTTTGCTAAGAATTGTAAAGGTTTGAAGAAATTATCGTGTGGATCTTGTACTTTTGGATCTAAAGGTATGAACGCTGTGCTTGATAATTGTGCTGCACTTGAGGAGCTTTCGGTGAAGCGTCTCCGTGGAATTGCGGAGACTGCGGTGGCTGATCCGATTGGGCCGGGTGTTGCTGCGGCGTCGCTTAAGACGATATGTTTGAAAGAGCTTTATAATGGACAGTGTTTTGGTTCTTTGATTCTTGGTGCTAAGAATCTAAAGACTTTGAAGCTTTTTCGATGCTCGGGTGATTGGGATACACTTTTTACGCTAATGGCAGAACGAGTTAGGAGCATGATTGTTGAAGTTCACTTTGAGAGGCTTCAGATCAGTGATATTGGATTGCAAGCTATTTCCAATTGTTCAAATTTGGAGATTTTGCATCTTGTTAAGACACCTGAGTGCACTGATATGGGACTTGTTGCAATTGCAGAACGGTGTAAGTTGTTGAGGAAGCTTCATATTGATGGGTGGAAAGCGAATCGGATTGGTGATGTAGGGTTAATTGCTGTTGCTAAGTTTTGCCCTAATTTACAAGAATTGGTGCTTATTGGTGTTAACCCTACGAAAGCGAGTTTGGAAATGTTGGCAGCTAATTGCCCTAATTTAGAGAGGTTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCATGCATTGCTGCAAAGTGTTTAGCTTTGAAGAAACTCTGCATTAAGAGTTGTCCTGTTACTGATCAAGGGATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAATGTAAGGGTGTTACAGTTGAGGGTGGTGATTGGTTGAGGCGCTCTAGAGGATCGGTTGCTGTTAATTTGGATACAGTCGAAGCAGAACTTCAAGATGCTAGTGATGGTGGAGCACAAGACAATGGTATAGAATTTCCTCCGATGCCTACAACGGCAAATATTGCATCGAGAAGTACCGTTCGATCGAGTTCATTCAAGCAAAGGTTAGGGCTTTTGTCCGGGAGGAACATAGTTGCTAGTACTTTGAGAAGATGGTCCTCCGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1644 0.4489 MGQAASTATVAANRRESLQVNRSINSTKTNRSTALVSPMVAGEDDDVLDPVNGDGGGGSGVVNSDYISDLPDECLAIVFQSLCPADRNQCSLVCRRWFYVEGQSRQRLSLNAKLDLLPVIPSLFDRFDSVTKLALKCDRRSVSIRDEALVIISERCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGIAETAVADPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVRSMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRIGDVGLIAVAKFCPNLQELVLIGVNPTKASLEMLAANCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVTDQGMEALANGCPNLVKVKVKKCKGVTVEGGDWLRRSRGSVAVNLDTVEAELQDASDGGAQDNGIEFPPMPTTANIASRSTVRSSSFKQRLGLLSGRNIVASTLRRWSSGGSTSARHG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3654 547 Gene3D Ribonuclease Inhibitor 104 474 IPR032675 -
Tpr1g3654 547 SUPERFAMILY RNI-like 117 482 - -
Tpr1g3654 547 PANTHER F-BOX PROTEIN SKIP2 51 478 - -
Tpr1g3654 547 Gene3D - 66 103 - -
Tpr1g3654 547 Pfam F-box domain 67 97 IPR001810 GO:0005515
Tpr1g3654 547 Pfam Leucine Rich repeat 156 179 IPR001611 GO:0005515
Tpr1g3654 547 Pfam Leucine Rich repeat 419 438 IPR001611 GO:0005515
Tpr1g3654 547 SUPERFAMILY F-box domain 57 100 IPR036047 GO:0005515
Tpr1g3654 547 ProSiteProfiles F-box domain profile. 64 97 IPR001810 GO:0005515
Tpr1g3654 547 PANTHER UNCHARACTERIZED 51 478 - -
Tpr1g3654 547 SMART LRR_CC_2 390 415 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 182 206 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 416 440 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 156 181 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 311 336 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 365 389 IPR006553 -
Tpr1g3654 547 SMART LRR_CC_2 337 364 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3654 Tpr-Chr1 40678917 40681680 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3654 1 40678917 40681680 Tpr1g3654 1 40678917 40681680 ECH