Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3648 ATGGCTGATCAAGAAAACACTATCCCCACGCGCCGCCCTCAACGTGAAGCAAAAACAAGAGCAGTAGCTGCACTATCTGAACAGCGTAAAAGGAAGCGCGTTGAGCGCGTGGAGCGTGTTGCTCTTGGTGATGTAACTAATACATCGGTGAAAAATGTTTCTGATATTCATAAACAGAAAAAGAGAAACATTGCGAAATCGAAGTCAGTTGAAGAAGAATCTCCGGTACCGGAAAATTTGGAAGTGAAATCGGAAGTGAAACCGGAAGATCCTCAATTATGTGGGCCTTATGTTTCTGATATTTACGATTATCTTCGTAATTTAGAGGTTGATCCTAGTAAAAGACCTTTGGCTGATTACATTCAGAAAGTTCAGAGGGATGTTAATTCTAGTATGAGGGGTGTTCTTGTGGATTGGTTGGTTGAAGTTGCTGAAGAATACAAACTTGTTTCGGATACCCTTTATTTTTCTGTTTCATACATTGATAGGTTTTTGTCTTTGAATGATTTAAGTAGACAGAAGTTGCAATTGCTTGGTGTTTCTTCAATGCTGATTGCTTCAAAATATGAAGAGATTAAGCCGCCTGAGGTGGAGGACTTTTGCTACATTACCGACAATACATACTCGAAGGAAGAGGTTTTGGGCATGGAGGCTGATATTTTGAAGGCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAGACATTTCTAAGAAGATTCTTCACTAAAGTTGGTCAAGAGGGTATTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTGGCTGTTACCTTGCTGAGCTCAGTTTGCTGGATTATCATTGTGTGAAGTTCTTGCCTTCTATGGTGGCTGCTTCAGTTGTATTTCTCGCACGTTTTATGTTAAGCCCAAAGACTCATCCTTGGAATTTAGCCATCTATCAACTCACCAGATATAATCCAGCTGAATTGAAGGAATGTGTTCTAACGATACATGACTTGTACCTCGGTAGGAAAGGGGGCGCTTTGCAAGCTGTGAGAGATAAATACAAACAACACAAGTTCAAATGTGTGGCAACAACACCCTCTCCACCGGAGATACCGCTTTCTTTTTTTGAATTTAGAGAGGCAGATCCATAG 1113 0.407 MADQENTIPTRRPQREAKTRAVAALSEQRKRKRVERVERVALGDVTNTSVKNVSDIHKQKKRNIAKSKSVEEESPVPENLEVKSEVKPEDPQLCGPYVSDIYDYLRNLEVDPSKRPLADYIQKVQRDVNSSMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVLGMEADILKALKFELGGPTIKTFLRRFFTKVGQEGIDASELQFEFLGCYLAELSLLDYHCVKFLPSMVAASVVFLARFMLSPKTHPWNLAIYQLTRYNPAELKECVLTIHDLYLGRKGGALQAVRDKYKQHKFKCVATTPSPPEIPLSFFEFREADP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3648 370 Pfam Cyclin, C-terminal domain 231 354 IPR004367 -
Tpr1g3648 370 MobiDBLite consensus disorder prediction 53 87 - -
Tpr1g3648 370 SMART Cyclin_C_2 231 355 IPR004367 -
Tpr1g3648 370 Gene3D - 116 229 - -
Tpr1g3648 370 SUPERFAMILY Cyclin-like 231 357 IPR036915 -
Tpr1g3648 370 SMART cyclin_7 138 222 IPR013763 -
Tpr1g3648 370 SMART cyclin_7 235 324 IPR013763 -
Tpr1g3648 370 CDD CYCLIN 132 221 IPR013763 -
Tpr1g3648 370 SUPERFAMILY Cyclin-like 89 228 IPR036915 -
Tpr1g3648 370 Gene3D - 100 351 - -
Tpr1g3648 370 MobiDBLite consensus disorder prediction 9 27 - -
Tpr1g3648 370 PANTHER CYCLINS 29 366 IPR039361 -
Tpr1g3648 370 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 29 366 - -
Tpr1g3648 370 MobiDBLite consensus disorder prediction 54 87 - -
Tpr1g3648 370 PIRSF Cyclin_A_B_D_E 1 359 IPR039361 -
Tpr1g3648 370 ProSitePatterns Cyclins signature. 133 164 IPR006671 -
Tpr1g3648 370 MobiDBLite consensus disorder prediction 1 27 - -
Tpr1g3648 370 CDD CYCLIN 231 323 IPR013763 -
Tpr1g3648 370 Pfam Cyclin, N-terminal domain 100 228 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3648 Tpr-Chr1 40600663 40603841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3648 1 364 Core Cell Cycle Gene Families AT5G43080 58.630 6.85e-149 422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3648 1 40600663 40603841 Tpr1g3648 1 40600663 40603841 ECH