Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3636 ATGGCTCTAGAAGCACTTAACTCACCCACTTCTACTACCCCTAAATTCACTTTTGATGATTCACCTTCTCTTCCATGGACTAAACGTAAACGTTCTAAGCGTTCACGTTCTTGCACTGAAGATGAGTATCTTGCTCTCTGTCTCATCATGCTCGCTCGTGGCAAAACCAACGCTCACGATTTCAACCCAAATCCAGCAGTAACCACTGACAACAACAACGTTAACAATAAACATAGTTATAAATGTTCTGTTTGTAACAAAGAGTTTTCTTCTTATCAAGCACTTGGTGGGCACAAAGCAAGTCACCGAAAAAACTCTACCACCGCCGCTGGAACTGCCGGAGTTGATGAACAATCAACTTCATCAGCCGCAACCACAACAAGTTCTGCAAACACAGCCGTTGGAAACGGTGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAGTCTTTTCCAACTGGACAAGCTTTGGGTGGACACAAACGTCGTCACTATGAAGGTACTGTCGGCGGCAACGGCGGTGGTGGTGGTGGTTCTGCTGCTACAACAACTGTATCTGAAGTAGGGTCCACACATACTCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGAGTTTGGTAACAAGGTCGGTGAAGATGAAGTTGAAAGTCCTCATCCTGTTATGATCAAGAAAAAGCCTCGTGTTTTCGTGGTGCCCAAGATTGAAATTCCTATTCTCCATTGA 729 0.4472 MALEALNSPTSTTPKFTFDDSPSLPWTKRKRSKRSRSCTEDEYLALCLIMLARGKTNAHDFNPNPAVTTDNNNVNNKHSYKCSVCNKEFSSYQALGGHKASHRKNSTTAAGTAGVDEQSTSSAATTTSSANTAVGNGGGVRSHECSICHKSFPTGQALGGHKRRHYEGTVGGNGGGGGGSAATTTVSEVGSTHTRDFDLNIPAFPEFGNKVGEDEVESPHPVMIKKKPRVFVVPKIEIPILH* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3636 242 Gene3D Classic Zinc Finger 77 165 - -
Tpr1g3636 242 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 178 193 - -
Tpr1g3636 242 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Tpr1g3636 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 96 137 - -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 100 136 - -
Tpr1g3636 242 SUPERFAMILY beta-beta-alpha zinc fingers 79 165 IPR036236 -
Tpr1g3636 242 PANTHER ZINC FINGER PROTEIN ZAT10 1 232 - -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 156 193 - -
Tpr1g3636 242 SMART c2h2final6 143 165 IPR013087 -
Tpr1g3636 242 SMART c2h2final6 80 102 IPR013087 -
Tpr1g3636 242 Pfam C2H2-type zinc finger 143 166 - -
Tpr1g3636 242 Pfam C2H2-type zinc finger 80 104 - -
Tpr1g3636 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Tpr1g3636 242 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g3636 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 232 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3636 Tpr-Chr1 40507539 40508645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3636 1 238 C2H2 Transcription Factor Family AT1G27730 47.390 2.45e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g3636 zf-C2H2_6 3.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3636 1 40507539 40508645 Tpr1g0482 1 4066256 4067559 ECH
Tpr1g3636 1 40507539 40508645 Tpr1g3636 1 40507539 40508645 ECH
Tpr1g3636 1 40507539 40508645 Tpr7g0864 7 7655716 7656797 PCT