Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3634 ATGGAACCTATAGTAGGAGCTTTCCCTGATGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAGATGATGGATTGAACAATGTAACACAATCCACATTTTACTCTTCTGAAAATGAGTGTATGTTTTATTCTTTTGATCATATCTCAAACTCTAACTATATTTCTCAATCTCAAGAAAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATCAATATTTTAGTTATCCTAATCAAGTATTATTAGAAAATAATGTTGATACTTGTAAATCCATGGATGAGAATTTTTTTGCTTCATTTGTCACACCCTTTAATGAGATTGTAATGGAAGAGAATATGAAATTGAATGAAGATGTTATTGGAAGTGATGATCATATTTTGGAGAAAAATGATTACACTACTCATGTTGATTTTCCAAACAAGAATGAGTTGCAAATGCAGCTCAAAAGGAAGCTTGATGTGATAGAAGTTGAAGAAAAAATAAACAAGAAATCCGAGAATCCAAAGAAAAAATCCCGTGTTTCAAAAGATGGGCAAGGATGCATGAAAAATGCAAGGTCAAAGAATAACTTGAAGAAAGTTGCTAGCAATGAAGAGATTGCAGAAGAGATTGATAATGGAGGATCAAATGGAAATAGTTCTAGTAGTAACATTTCTGAGGATGAAAATGGTTCTCAAGAAAATAGTGGAGGTACTACTCTAAACTCAAATGGGAAGACAAGAGCTAGTAGAGGTTCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGGCTAAGAATTCTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAAGTTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTCAACAATTCTCTACCACTATGA 1062 0.3343 MEPIVGAFPDGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGEDDGLNNVTQSTFYSSENECMFYSFDHISNSNYISQSQENSYNSNSSASDDTNQYFSYPNQVLLENNVDTCKSMDENFFASFVTPFNEIVMEENMKLNEDVIGSDDHILEKNDYTTHVDFPNKNELQMQLKRKLDVIEVEEKINKKSENPKKKSRVSKDGQGCMKNARSKNNLKKVASNEEIAEEIDNGGSNGNSSSSNISEDENGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNNSLPL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3634 353 CDD bHLH_AtIND_like 270 332 - -
Tpr1g3634 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 350 - -
Tpr1g3634 353 Gene3D - 271 327 IPR036638 GO:0046983
Tpr1g3634 353 MobiDBLite consensus disorder prediction 229 273 - -
Tpr1g3634 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Tpr1g3634 353 SMART finulus 275 324 IPR011598 GO:0046983
Tpr1g3634 353 MobiDBLite consensus disorder prediction 184 200 - -
Tpr1g3634 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 334 IPR036638 GO:0046983
Tpr1g3634 353 MobiDBLite consensus disorder prediction 184 281 - -
Tpr1g3634 353 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 350 - -
Tpr1g3634 353 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3634 Tpr-Chr1 40485253 40487102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3634 188 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 58.621 1.16e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g3634 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3634 1 40485253 40487102 Tpr1g3634 1 40485253 40487102 ECH