Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3628 ATGGGAACGGAAAGTTACACTTACATGGGACGGAGTTTTAACGAATTCACCATCAACGATGATTCTACTTCTTCAGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTCAATCCAGACGACTCCTTATTTCCTGTGCTTCCGAAAATTCAGATGATCTTATCCGTCAACTTGTTTCCGATCTTCATTCCGATTCAATCGAAGAACAAAAACAAGCCGCCATGGAAATTCGGTTACTCGCCAAAAATAAACCGGAAAATCGAATCAGAATCGCTAAAGCTGGCGCAATTAAACCTTTAATTTCACTCGTTTCTTCACAAGACCTTCAACTTCAAGAATATGGTGTAACTGCGATTTTGAATCTCTCTTTATGTGACGAGAATAAAGAGTTAATAGCTTCTTCAGGAGCGATTAAGCCACTAGTTAGAGCGTTAAACTCAGGAACTTCAACTGCGAAAGAGAACGCAGCGTGTGCGTTGCTTCGTTTATCTCAAGTCGAAGAGAACAAATCAGCTATTGGAAGATCTGGTGCCATTCCGTTATTAGTGAACCTTCTAGGAAGCGGAGGAATCCGCGGCAAGAAAGACGCGTCGACGGCGCTGTACACACTGTGTACAGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCGGGGATTATGAAGGTTTTGGTTGAATTAATGGCGGATTTTGAATCGAATATGGTGGATAAATCAGCGTATGTTGTTAGTGTATTGGTGTCGGTGCCGGAAGCAAAGACGGCGCTGGTGGATGAAGGTGGCGTTCCGGTGTTGGTGGAAATAGTTGAAGTTGGATCGCAGAGACAGAAAGAAATCGCGGCGGTTATTCTGTTACAGCTTTGTGAAGATAACGTGGCTTATCGATCCATGGTGGCTCGCGAAGGTGCGATTCCACCTTTGGTTGCTTTGACTCAATCGGGCACCAATCGCGCAAAACAAAAGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACACGTACTACATCAGAAATTACACATGAACCCTAG 1053 0.4444 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSQSRRLLISCASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKSAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKTALVDEGGVPVLVEIVEVGSQRQKEIAAVILLQLCEDNVAYRSMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRTTSEITHEP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3628 350 SMART arm_5 131 171 IPR000225 GO:0005515
Tpr1g3628 350 SMART arm_5 213 253 IPR000225 GO:0005515
Tpr1g3628 350 SMART arm_5 172 212 IPR000225 GO:0005515
Tpr1g3628 350 SMART arm_5 90 130 IPR000225 GO:0005515
Tpr1g3628 350 SMART arm_5 254 294 IPR000225 GO:0005515
Tpr1g3628 350 SMART arm_5 296 336 IPR000225 GO:0005515
Tpr1g3628 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Tpr1g3628 350 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 343 - -
Tpr1g3628 350 Gene3D - 198 341 IPR011989 -
Tpr1g3628 350 Gene3D - 28 197 IPR011989 -
Tpr1g3628 350 PANTHER U BOX DOMAIN-CONTAINING 5 343 - -
Tpr1g3628 350 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Tpr1g3628 350 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Tpr1g3628 350 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Tpr1g3628 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Tpr1g3628 350 SUPERFAMILY ARM repeat 57 332 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3628 Tpr-Chr1 40446440 40449651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3628 25 338 U-box Gene Family AT2G23140 47.222 1.46e-85 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3628 1 40446440 40449651 Tpr1g3628 1 40446440 40449651 ECH
Tpr1g3628 1 40446440 40449651 Tpr7g0857 7 7611781 7615858 PCT