Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3625 ATGGTGTGTTCAACACTGCAAAAAGTCCCCATCTTCGTAATCTGTGTTGCTTTTGATTTTTCGTTGTTGTGGAAGAAGATGTTGTGTGCTTGTTCTGGAGAGCAGTATAAATTTGAAGAGGCTCCACAGTCACCGGATTCCCTAGCAACAAGGGATTTTTCTGCCAGTGGACTATCTTCAAGAACTGGAGATTGGGAATCCAAATTAAGCGACAATCAAGTTGAAGAGGTCGAAACTACTCTGAAACAAGCTGACACATTAAACTATGAGGAAGCTAGAGCTTTGTTGGGGAGGCTTGAATATCAAAAAGGGAACTTTGATGCCGCCTTTAAAATGATTCAGGGTATTGAGATCAGTTCTTTGACCCCAGGGATGATCAGGGCTATATCTGAAAGAAACAAGCTAAGAAAATCTCGTTCGAAGACGGGTACTGTGCTTCCTAATTTGATGTCAATGCATTCAGTAAGCCTGCTAATTGAGGCAATTTTGCTTAAAGCCAAGTCCTTAGAGGAACTTAAGCGAGACGAAGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAATTGAATCAGCTCTTCCTAATGGAATGCCTGATGGTATAGGTGAAGATTGTAAGTTGCAGGAATGGTTTCACAGAGCATTGGAGCTGCTTCCAAATCTATGGATCAAGGCAGGTTTTCTAGATGAAGCTGTCACTGCTTATCGGCGTGCTCTGGTCAAGCCATGGAACTTGGAGGCGAGGAGGTTGGCATGTCTACAAAAGGATTTAGCTACCACACTACTCTATGGTGGTGTTGAAGTAAACCTACCATCTCACTTGCAAGTGAATGGTCCAACAACACCAATGAGTAACATTGAAGAAGCGATACTTTTGTTATTGATACTATCAGGAAAGATGGCACTACAAGAAATAGATTGGGATGCTGAAATAATCGATCATCTTACATTTTCGCTTTCAGTTACTGGGATGTTTGAATCGTTGGCAGATTCTGTAGAGCAGATCCTACCAGGTATCTTTGGTCGAGCTGAGATGTGGTACTTTCTCGCTCTTTGTTACAGTGCTGCAGGACAGAATGAAGCAGCGTTAAACCTTTTGAGAAAAGCTTGTGGTAGTTCTGAGTCAGAGCATATACCTCATTTTGCTTCATATTTGTTTGGTGCAAAACTGTGTTCCCAAAATCCAATTCATGCTCATGAAGGCATCAAATTTTCAAAGCAAGTTATTGATCTAGCCAAGCATCGAAATGAGCATTTTTTGGTTCAAGGCCAACAAATTCTCGGTGTTTGTTACGGGGCTGCAGCTAGAACATCTGTAGTGGATTCTGAAAGAATTATATTTCAAAAAGAGTCTTTGAACTTTCTAAACGAAGCTGCTCTAATTGGAAGTGATGATGCAGAAGTGATGTTCAGCCTTGGACTGGAAAACGCAGTTCAGAGGAATCTAGATGCAGCTTATCAAAACATAATGAGGTACTCAGATATGATAGCTGGAAGTTCTACAAGAGGTTGGGAGCTGTTAGCGCTCATCGTATCCGCACAACAGAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGACGCTGGTAGCGTAGATCAGTTAGAACTACTAAGACTCAAAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAGCAGCCAAAAAGGAGCTTTTGCATCAAGCTAAGAACTCTGAGTTTGATCAAGCAAAAATATTCAAGGATGAGGCATTAACGGAGCGAAAGTTGGAAATGGAAGCATGGCAGGATTTGGCAACAATTTATACAGATCTTAATTCATTTCTTAATGCAAAAGCTTGTGTTGACAAAGCCCAATTACTTGAGTTTTTCTCTCCGAGAAGTTGGCATAATACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTACTCAATCTCATTCTCAATAGAACCTGATTATATTCCCAGTATCAATTCAATTGCAAAGTTGTTGATTAAACTTGGTATGCAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTACGATTGGAACCTACAAACCAGGACGCGTGGTTCAATCTTGGATTGGTTTCAAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTATCGCTTTCAACTCCAGTGCAAAAGTTTGAGTGA 2232 0.405 MVCSTLQKVPIFVICVAFDFSLLWKKMLCACSGEQYKFEEAPQSPDSLATRDFSASGLSSRTGDWESKLSDNQVEEVETTLKQADTLNYEEARALLGRLEYQKGNFDAAFKMIQGIEISSLTPGMIRAISERNKLRKSRSKTGTVLPNLMSMHSVSLLIEAILLKAKSLEELKRDEEAAKECRIIVDTIESALPNGMPDGIGEDCKLQEWFHRALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEARRLACLQKDLATTLLYGGVEVNLPSHLQVNGPTTPMSNIEEAILLLLILSGKMALQEIDWDAEIIDHLTFSLSVTGMFESLADSVEQILPGIFGRAEMWYFLALCYSAAGQNEAALNLLRKACGSSESEHIPHFASYLFGAKLCSQNPIHAHEGIKFSKQVIDLAKHRNEHFLVQGQQILGVCYGAAARTSVVDSERIIFQKESLNFLNEAALIGSDDAEVMFSLGLENAVQRNLDAAYQNIMRYSDMIAGSSTRGWELLALIVSAQQRFKDAETIVDFALDDAGSVDQLELLRLKAVLQIAQQQPKQAIETYRTLLTVIAAKKELLHQAKNSEFDQAKIFKDEALTERKLEMEAWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHNTGKLFEAQSLNKEAFISYSISFSIEPDYIPSINSIAKLLIKLGMQSLPLARSFLMNALRLEPTNQDAWFNLGLVSKMEGSLQQAADCFQAAYELSLSTPVQKFE* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3625 743 SUPERFAMILY TPR-like 578 734 IPR011990 GO:0005515
Tpr1g3625 743 SUPERFAMILY TPR-like 457 565 IPR011990 GO:0005515
Tpr1g3625 743 ProSiteProfiles TPR repeat profile. 704 737 IPR019734 GO:0005515
Tpr1g3625 743 SMART tpr_5 537 570 IPR019734 GO:0005515
Tpr1g3625 743 SMART tpr_5 343 376 IPR019734 GO:0005515
Tpr1g3625 743 SMART tpr_5 704 737 IPR019734 GO:0005515
Tpr1g3625 743 SMART tpr_5 600 633 IPR019734 GO:0005515
Tpr1g3625 743 SMART tpr_5 634 667 IPR019734 GO:0005515
Tpr1g3625 743 Gene3D Tetratricopeptide repeat domain 147 413 IPR011990 GO:0005515
Tpr1g3625 743 PANTHER PROTEIN NPG1 27 742 IPR043376 -
Tpr1g3625 743 PANTHER PROTEIN NPGR1 27 742 - -
Tpr1g3625 743 Coils Coil 159 179 - -
Tpr1g3625 743 Gene3D Tetratricopeptide repeat domain 448 739 IPR011990 GO:0005515
Tpr1g3625 743 SUPERFAMILY TPR-like 94 489 IPR011990 GO:0005515
Tpr1g3625 743 Pfam Tetratricopeptide repeat 343 373 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3625 Tpr-Chr1 40409557 40415006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3625 27 742 Calmodulin-binding Proteins AT1G27460 55.833 0.0 802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3625 1 40409557 40415006 Tpr1g3625 1 40409557 40415006 ECH