Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3620 ATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTACCAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCATCACTGCAAAGGAACTCTTAAGCTAAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGATCAATTGTTCAAAAGAACTGGAAGCCTTGAAAAAAGCTTTGAAGGGACACCAAAAATTGCCAAACCAGAAAGAAATAGTGATAATATTGAGAAACCTGCAGCAGTTAAAGCCTCGAGTATGTTTGGTGGAACAAGGGACAAATGTTTAGGTTGTCAGAAAACAGTTTATCCAACTGAAAAGGTTACGGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTACTATTAGTCCTTCGAATTACATAGCACATGAAGGAAAACTCTACTGCAAACATCACCATATCCAACTGATCAAAGAAAAGGGAAATTTAAGCCAGCTTGAAGATCATGAGAAAAATGCAATGCGTGGAAAAATCAATGTTGATGAAGTTGCAGCTGAAACATGA 594 0.3788 MAFAGTTQKCMACTKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIAKPERNSDNIEKPAAVKASSMFGGTRDKCLGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEDHEKNAMRGKINVDEVAAET* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3620 197 Gene3D Cysteine Rich Protein 106 175 - -
Tpr1g3620 197 Gene3D Cysteine Rich Protein 4 74 - -
Tpr1g3620 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tpr1g3620 197 CDD LIM2_SF3 111 171 - -
Tpr1g3620 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Tpr1g3620 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tpr1g3620 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tpr1g3620 197 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 181 - -
Tpr1g3620 197 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Tpr1g3620 197 PANTHER OS06G0237300 PROTEIN 1 181 IPR045268 GO:0051015
Tpr1g3620 197 SMART lim_4 9 61 IPR001781 -
Tpr1g3620 197 SMART lim_4 110 162 IPR001781 -
Tpr1g3620 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Tpr1g3620 197 Pfam LIM domain 10 64 IPR001781 -
Tpr1g3620 197 Pfam LIM domain 111 165 IPR001781 -
Tpr1g3620 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tpr1g3620 197 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3620 Tpr-Chr1 40361706 40364337 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr1g3620 LIM 4.6e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3620 1 40361706 40364337 Tpr1g3620 1 40361706 40364337 ECH
Tpr1g3620 1 40361706 40364337 Tpr7g0849 7 7547589 7549841 PCT