Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3015 ATGTCTTTTCAGTGTATAAGTTGCAAGCAATTGAGAAGTGTTGTAGCATTTCAAAGGAAGAGTGGATATTCAAAACTTTTCAACAGAAAAATGAGGTGTTGTAATTTTCTCCCTTTTAGATTTTCGAAAATGTGTTACCGGACAACACATAAATGTACAGATAAGAAGTTTGTGGAAATAGACCAACATGGTGTAAATAGTGGGTTAAAGTCACGTAAGAAGGTATTTGCTCTTATGGATCATAACATCCCTGGCCTAATTGGAAATAGAAGCGGTGAAATGGAATCTAAAATGAATCTGAAAGATGGAGTAGATGATTTTGACATCTCCTTGATATGTAAGATGTTTCCATCAATTACTTTTGGTAGTGCCCCTAAAGTGGATTTGTATGATGGGACCACAACATGTTCTGAAACAAATAGCATTTCGGCAACCAAAGATTTTGAACAGCATTTATATGATTTTTCAGAGGTAAGGGAGGTGCAAAATACTGTCTCTGAAGCATTGCCTTCTTTGCATGTTAATCACACTAGTGTAACATCTTTGGCTTTAAGAAAAGATGATTCTTTTCCTTGTCCTGTAAGCCCTCAATCAGTATCTTCAATATATGAAGAAAAATTGGATCAAGTTACTAGGGAGGATTCTCCAAAGAAAGCTGGGCTGCCGTCACAATCAAACCTTACACTTAATGAGTTATTTCTCGACAAATCTGTTAAATGCTTACCTGGATTAACCAAGAAGCAATACGAGCAACTAGATAACTGTGGGCTTCACACGTTACGGAAATTGCTGCACCATTTTCCACGATCATATGCCAATCTACAGAATGCACATGCTAAAATTGATGATGGGCAGTATTTGATCTTTGTTGGACAAGTCTTATCTTCAAGGGGTGTTAAAGCTAGTTGTTCATTTTCATTTCTTGAGGTGATTGTTAGTTGTCAGATTTTAGATGAGGAATCAGCTATTGAGCGTGTCACCGGAAAAGTTGGGCAAAAGAAGACAATTTATTTGCATTTGAAGAGATTTTTCCGTGGCACACGTTTTACTTTTAAACCTTTCCTTAATAGTATTGCAAACAAGTATCAAGTGGGAGGTATAGCATGTGTGAGTGGCAAGGTTAGGACTATGTATGCTAAAGACCACTACGAGATGAGAGAATATAATATTGATGTGCTTGAAGATGGAAAAGATTCATCCCTTTGTGCTAAAGAGAGACCATATTGTATCTACCCTTCAAAAGGGGGTATAAAGCCAGCATTTCTTCGGGACATTATTGCAAGAGCTTTACATGTCTTGCCTGTCAATGTTGATCCAATTCCTAAAGATATCACAGAGGAGTTTGGACTCTTAACTCTTCATGATGCATATTTTGGAATTCACAAACCAAAGGATATTAGTGACGCTGATCTGGCCCGCAAGCGACTTATATTTGATGAATTTTTTTACCTGCAGTTAGGACGATTATTCCAAATGCTCGAAGGTCTTGGTACACAAATAGAAAAAGATGGATTGCTAGATAAGTGTAAAAGACCAGAAAATAACACCGTGTGTACAGAGGAATGGTCCTGTCTCACCAAGAAGGTTTTGGATCTCCTTCCCTATACTCTTACTCCTGGTCAACAGCAAGCTATTTCAGAAATTATTTGGGATTTAAAAAGGCCAGTTCCAATGAATCGGCTACTGCAGGGTGATGTTGGATGTGGGAAAACTATTGTTGCTTTTCTTGCATGCATGGAGGTTATTGGCTCTGGCTATCAGGCTGCTTTCATGGTTCCAACTGAGTTGCTTGCAATCCAGCATTATGAACACTTGCTGACCTTGCTTGAAACCTTGGACGAGGTCAAGTTCAAGCCGACTGTTGCTTTACTCACTGGTTCAACCCCACTAAAACAATCGCGGATTATTCGCAATGGTATCCAGACCGGAGAAATTTCAATGGTCATTGGAACCCACAGTTTGATAGCAGCAAGTGTGGAGTTCTCAGCCTTACGTATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTGTTTTATAAATCTTCAATTCCGAGTATGGAAGATGCTATTACAGACGGGTCCTCAAAGAGTGATGACTATATGGCTCCTCATGTTCTTGCCATGTCTGCTACTCCCATCCCAAGGTCACTTGCGCTTGCTTTATATGGTGATATGTCACTGACACAGATAACCGACTTACCACCAGGAAGAATTCCTGTTCAAACATATACCATTGAAGGAAGTGACGAAGGATTCGAGGATGTCTACAAGATGATGATGGATGAGTTGGAAGATGGGGGAAAAGTTTATCTTGTCTACCCAATTATTGAACTTTCGGAGCAGTTACCTCAGCTCCGTGCTGCTTCTGCAGATCTCGAAGTTATCTCAAACCGGTTTCCAGGATACAATTGTGGCTTATTACATGGGAGAATGAAAAGTGATGAAAAAGAAGAAACATTAGGGAAGTTCAGAACTGGAGAATTGAATATACTACTTGCCACTCAAGTAATTGAAATTGGTGTTGATGTTCCAGATGCATCAATGATGGTTGTAATGAATTCTGAGAGGTTTGGAATGGCCCAATTACACCAACTCAGGGGCCGAGTTGGACGAGGAACAAGGCTATCAAAATGTATATTGATAGCATCAACTGTCACTGCCCTTAATCGTCTGAAAATATTGGAGCAATCATCAGATGGCTTTCATCTCGCTAATATGGACCTATTATTACGTGGACCTGGTGACTTGCTTGGCAAGAAACAATCTGGACATCTTCCCGAGTTTCCCATTACCAGATTGGAAGTGGATGGGAATATTTTACAAGACGCACACGTTGCTGCACTGAAAATATTAAGTGCTTCCCATGATCTGGAGCAATTTCCTGCACTTAAACTGGAGCTTGGCATGAGACAGCCGCTTTGCCTACTAGGTGATTGA 2967 0.3994 MSFQCISCKQLRSVVAFQRKSGYSKLFNRKMRCCNFLPFRFSKMCYRTTHKCTDKKFVEIDQHGVNSGLKSRKKVFALMDHNIPGLIGNRSGEMESKMNLKDGVDDFDISLICKMFPSITFGSAPKVDLYDGTTTCSETNSISATKDFEQHLYDFSEVREVQNTVSEALPSLHVNHTSVTSLALRKDDSFPCPVSPQSVSSIYEEKLDQVTREDSPKKAGLPSQSNLTLNELFLDKSVKCLPGLTKKQYEQLDNCGLHTLRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGQVLSSRGVKASCSFSFLEVIVSCQILDEESAIERVTGKVGQKKTIYLHLKRFFRGTRFTFKPFLNSIANKYQVGGIACVSGKVRTMYAKDHYEMREYNIDVLEDGKDSSLCAKERPYCIYPSKGGIKPAFLRDIIARALHVLPVNVDPIPKDITEEFGLLTLHDAYFGIHKPKDISDADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLDKCKRPENNTVCTEEWSCLTKKVLDLLPYTLTPGQQQAISEIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLTLLETLDEVKFKPTVALLTGSTPLKQSRIIRNGIQTGEISMVIGTHSLIAASVEFSALRIAVVDEQHRFGVIQRGRFNSKLFYKSSIPSMEDAITDGSSKSDDYMAPHVLAMSATPIPRSLALALYGDMSLTQITDLPPGRIPVQTYTIEGSDEGFEDVYKMMMDELEDGGKVYLVYPIIELSEQLPQLRAASADLEVISNRFPGYNCGLLHGRMKSDEKEETLGKFRTGELNILLATQVIEIGVDVPDASMMVVMNSERFGMAQLHQLRGRVGRGTRLSKCILIASTVTALNRLKILEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGNILQDAHVAALKILSASHDLEQFPALKLELGMRQPLCLLGD* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3015 988 TIGRFAM recG: ATP-dependent DNA helicase RecG 255 956 IPR004609 GO:0003678|GO:0006281|GO:0006310
Tpr1g3015 988 CDD DEXHc_RecG 476 744 - -
Tpr1g3015 988 SMART helicmild6 786 883 IPR001650 -
Tpr1g3015 988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 764 919 IPR001650 -
Tpr1g3015 988 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 6 988 - -
Tpr1g3015 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 744 IPR027417 -
Tpr1g3015 988 Gene3D - 750 921 IPR027417 -
Tpr1g3015 988 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 908 966 IPR045562 -
Tpr1g3015 988 SUPERFAMILY Nucleic acid-binding proteins 233 433 IPR012340 -
Tpr1g3015 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 937 IPR027417 -
Tpr1g3015 988 Gene3D - 494 741 IPR027417 -
Tpr1g3015 988 SMART ultradead3 533 751 IPR014001 -
Tpr1g3015 988 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 6 988 - -
Tpr1g3015 988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 551 740 IPR014001 -
Tpr1g3015 988 Pfam DEAD/DEAH box helicase 538 723 IPR011545 GO:0003676|GO:0005524
Tpr1g3015 988 Pfam Helicase conserved C-terminal domain 767 882 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3015 Tpr-Chr1 34551809 34567587 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3015 1 34551809 34567587 Tpr1g3015 1 34551809 34567587 ECH