Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3001 ATGGATAATCATAATAATATTCTTGGTCTTCTTAAACTTAGGATTAAAAGAGGTATTAATCTTGCAATTCGTGATGCTAAATCCAGCGATCCTTATGTTGTTGTCAACATGGGTGAACAGAAATTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAGTAAGGGATGTTAAAACTCCTATACATTTGACAGTTTTCGACAAAGATACTTTCTCCGTAGACGATAAAATGGGTGATGCAGATGTAGACTTGAAACCATATGTACAATCTGTACAAATGAGGTTGGACAAACTTCCAAATGGTTGTGCAGTTAAGAGGATTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTATAAAAATGGAAAAATCATCCAAGAAATGATTCTACGATTAAGAAATGTCGAGAGTGGGGAATTGGTTGTTGAAATCGAGTGGGTGGACGTCGCAGGTTGCAAAGGCCTATTAGGGGTACAAATTTAA 522 0.3697 MDNHNNILGLLKLRIKRGINLAIRDAKSSDPYVVVNMGEQKLKTRVVKNNCNPEWNEELTLSVRDVKTPIHLTVFDKDTFSVDDKMGDADVDLKPYVQSVQMRLDKLPNGCAVKRIQANRTNCLAEESSCIYKNGKIIQEMILRLRNVESGELVVEIEWVDVAGCKGLLGVQI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3001 173 Pfam C2 domain 10 99 IPR000008 -
Tpr1g3001 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 6 166 - -
Tpr1g3001 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 104 IPR035892 -
Tpr1g3001 173 Gene3D C2 domain 4 165 IPR035892 -
Tpr1g3001 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Tpr1g3001 173 CDD C2_ArfGAP 8 151 - -
Tpr1g3001 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 6 166 IPR044562 -
Tpr1g3001 173 SMART C2_3c 10 105 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3001 Tpr-Chr1 34425813 34427529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3001 41 168 C2H2 Transcription Factor Family AT1G70790 67.692 8.68e-63 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3001 1 34425813 34427529 Tpr1g3001 1 34425813 34427529 ECH