Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2822 ATGGCCAATGAATCTGAATCCGAAGTCTGTGATAATGCAATTCCACCACCAAAAATTTGCAAAAGGGAGTGTGAGGATGAAGATCAAGAGGATGTGATTACTAAGAAGCAGAAGAGAGACGAGGTTGTCGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATCAAGAGGATGTGATTACAAAGAAGCAGAAGAGAGACGAGGTTGTCGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATCAAGAGGATGTGATTACTAAGAAGCAGAAGAGAGACGAGGTTGTCGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATCAATCCAGATCAAGAGGATGTGATTACTAAGAAGCAGAAGAGAGACGAGGTTGTCGAGGTTGTTGTAAACCAAGAGAATGAGGAAGAAATTAATCCAGATCAAGAGGATGTGATTACTAAGAAGCAGAAGAGAGATGAGGTTGTCGAGGTTGTTGCAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATCAAGAGGATGTGATTACTAAGAAGCAGAAGAGAGACGAGGTTGTTACAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATCAAGAGGACGTGATTACTAAGAAGCAGAAGAGAGACGAGGTTGTCGAGGTTGTTGTAAAGCAAGATAATGAGGAAGAAATTAATCCAGATCAAGAGGATGTGATTACAAAGAAGCAGAAGAAAAACGAGGTTGTCGAGGTTGTTGTAAACCAAGAGAATGAGGAAGAAATTAATCCAGATTATTCTGAACATGATAATAAACTTGAAGCTGAAAATGAATCTGGTACTGGTTTCATTGCTTTGGAACCGGTGGATGATGGTAGCACAGATGCTGACTCTCCCAGAAGCTTTGGTGAGGATAATCCTGAAGATTTAGAGAGTCCAGAGTACACCGAGGAAGAAATAGAGGAAAAAGTTTCCAAAACACCTCAGGAAAGGCATGAAACCCCAGTCACGCTAAACGGAAAATATGCTGAATCGAAGACAATATTTGTTAGAAACCTGTCATATAGTGTGGAACGGACTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAGCCTAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACGAAAAGCCCTTAAATTGGATAATACAGAATTGTTGAATCGCCACATCAAAGTTGGTATAGCTGTAGAAAAGAGTGATTATCCCCCCTATAAAAGCAACTCGAGCAGCTCATTCCATAAGGGTGGAAATCTTCAATCTCACACTGTAAAGGGTTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAACAGTGCATCAAAGACCATATATGTCAGAAACTTGTCATACTCCGTGGAACGAGCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGTGAAGGGAATTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAAAAGGCTGTTGCGTTGAATAAGAAAGTATTTTTTAATCGTCTTATGTTTGTTGGTTTAGCTCTGGAAAGGGGTAAATATTCCCCTAATAGAAGCAGCTGGTCGTGGAGCAGCTCATTCCTTAAGGATGAAAAAATTCAGTCTCAAACTGTACCTGTGAAGTGTTTTGATACATCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGAGATGTTTGATGCTGCCTCTGCTGAGAGTAAAGTTCCTGAAACCCCATCTACCGGAAAAGAGAAAAATGATGGATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGCGGAGAAGTTGTTGATGTCCGACTCCATGTGGATGTTGAGTTTGCAACCGCAGAAGCTGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTAATGAACCGTCCCATCAAAGTTGGTAAAGCTTCAGAAGAGGGTGAATGTTTCCCAAATAGAGGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGTCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTGCAGAAGAGAAGATAAAAGCTAGCCTGTATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCATTACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCTCATTTGGACTTCAAGGATACTGATGGCTATAATAAAGCACTAAAACTTGATCAAACTGCGATTGGAAATTATTGGTTGTCAGTTGAAAAAGCAAAGCCAAGGATAAGACGTGATAATTATGGTATAGGTGGTGGCAGAGGTGGCTATCACGTTGGCGGTAGGGATGGAGGAGACCATGGCGAGAGAGCAGGTTGGGGCAGAAGTCATGGCGCTGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA 2547 0.4099 MANESESEVCDNAIPPPKICKRECEDEDQEDVITKKQKRDEVVEVVVKQENEEEINPDQEDVITKKQKRDEVVEVVVKQENEEEINPDQEDVITKKQKRDEVVEVVVKQENEEEINPDQEDVITKKQKRDEVVEVVVNQENEEEINPDQEDVITKKQKRDEVVEVVAKQENEEEINPDQEDVITKKQKRDEVVTKQENEEEINPDQEDVITKKQKRDEVVEVVVKQDNEEEINPDQEDVITKKQKKNEVVEVVVNQENEEEINPDYSEHDNKLEAENESGTGFIALEPVDDGSTDADSPRSFGEDNPEDLESPEYTEEEIEEKVSKTPQERHETPVTLNGKYAESKTIFVRNLSYSVERTDMEDIFKDCGEVVDVRFSLDPEGRFRGFGHVEFGTAEAARKALKLDNTELLNRHIKVGIAVEKSDYPPYKSNSSSSFHKGGNLQSHTVKGFDASLVENKPKSPATPNETNSASKTIYVRNLSYSVERADMENLFKDCGEIVDVRLHTDREGNFKGYGHVQFATAEAAQKAVALNKKVFFNRLMFVGLALERGKYSPNRSSWSWSSSFLKDEKIQSQTVPVKCFDTSLAEDKLTCAKEEVKDIEMFDAASAESKVPETPSTGKEKNDGSKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRLMNRPIKVGKASEEGECFPNRGSSISFQKAESFQSLTVFVIGFDTSVAEEKIKASLYKHFCSCGEITRISLPKFPDSGTVKGFAHLDFKDTDGYNKALKLDQTAIGNYWLSVEKAKPRIRRDNYGIGGGRGGYHVGGRDGGDHGERAGWGRSHGAGRHWTANTEHW* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2822 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 422 IPR000504 GO:0003723
Tpr1g2822 848 SUPERFAMILY RNA-binding domain, RBD 463 561 IPR035979 GO:0003676
Tpr1g2822 848 SUPERFAMILY RNA-binding domain, RBD 712 826 IPR035979 GO:0003676
Tpr1g2822 848 MobiDBLite consensus disorder prediction 168 216 - -
Tpr1g2822 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 416 IPR000504 GO:0003723
Tpr1g2822 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 631 689 IPR000504 GO:0003723
Tpr1g2822 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 541 IPR000504 GO:0003723
Tpr1g2822 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 735 789 IPR000504 GO:0003723
Tpr1g2822 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 718 799 IPR000504 GO:0003723
Tpr1g2822 848 MobiDBLite consensus disorder prediction 254 334 - -
Tpr1g2822 848 Gene3D - 585 699 IPR012677 -
Tpr1g2822 848 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 713 834 - -
Tpr1g2822 848 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 278 560 - -
Tpr1g2822 848 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 599 694 - -
Tpr1g2822 848 SMART rrm1_1 630 691 IPR000504 GO:0003723
Tpr1g2822 848 SMART rrm1_1 475 546 IPR000504 GO:0003723
Tpr1g2822 848 SMART rrm1_1 719 795 IPR000504 GO:0003723
Tpr1g2822 848 SMART rrm1_1 347 418 IPR000504 GO:0003723
Tpr1g2822 848 SUPERFAMILY RNA-binding domain, RBD 338 440 IPR035979 GO:0003676
Tpr1g2822 848 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 713 834 - -
Tpr1g2822 848 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 278 560 - -
Tpr1g2822 848 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 599 694 - -
Tpr1g2822 848 Gene3D - 313 452 IPR012677 -
Tpr1g2822 848 Gene3D - 701 837 IPR012677 -
Tpr1g2822 848 Gene3D - 453 566 IPR012677 -
Tpr1g2822 848 MobiDBLite consensus disorder prediction 293 307 - -
Tpr1g2822 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 629 695 IPR000504 GO:0003723
Tpr1g2822 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 550 IPR000504 GO:0003723
Tpr1g2822 848 SUPERFAMILY RNA-binding domain, RBD 622 707 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2822 Tpr-Chr1 32432841 32449276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2822 348 592 Eukaryotic Initiation Factors Gene Family AT4G34110 26.275 6.39e-15 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2822 1 32432841 32449276 Tpr1g2822 1 32432841 32449276 ECH