Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2372 ATGGAGAAAGATAACGACTATACGACACCAGGTTTCAACACACTTGACTACACACAAGATCAACAACAATATGAACAACTTATGAAGTATCGAGTTGGCGAAACTTCGGGCGAAAACAACGGGATGGTGGTGGATAATTACATGCCTCAAACACAAACTGCTGGAGGTTTTTATGGTGCAAATAATTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGCTTTAAACCGGGAAGAATCTGATCCGGTATATTTCATGAAGTTTCCTGTCTTGAACAACAAGATGGAAAATGAAAACTTGATTTTTAGTGGTGGTGATGGGATAGGAGAAAATGAATCAAGAGATGATCGTCAACAAGATCAGTACGAAGAAATAAATCGAGTTTCTGAGGAGAACAACAACGTTTCGGTGCAAGTAGTACAAGAGAACAATAAGAAGAGGAAGAGACCAAGAAGTGTTAAGACAAGTGAAGAAGTTGAGAGTCAAAGAATGACTCACATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCTCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCAATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTTTAGAATCACAAAAGAGAAGGAGATTACTAGGAGAAGCACAATCAAAACAAGTTGAGGATTCAGCTCCATTTTTTCCAGCAACTAATTTACCAACAAATGATCAGATGAAGCTAGTTGAGATAGAAACTGGACTAGAAGAAGAAACAGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAACTTCTTGGATTTGATGCAATGATTAAAATCCTATCAAAGAGAAGGCCAGGACAGTTGATCAAGATCATTGCTGCTCTTGAAGATATGCAGCTTATTATCCTTCACACCAACATCACCACCATTGAACAAACGGTTCTTTATTCATTCAATGTTAAGGTAGCTAGTGATACAAGGTTCACAGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACCACCACCATGTGA 1098 0.3889 MEKDNDYTTPGFNTLDYTQDQQQYEQLMKYRVGETSGENNGMVVDNYMPQTQTAGGFYGANNSFDKMSFADVMQFAALNREESDPVYFMKFPVLNNKMENENLIFSGGDGIGENESRDDRQQDQYEEINRVSEENNNVSVQVVQENNKKRKRPRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQVEDSAPFFPATNLPTNDQMKLVEIETGLEEETAESKSCLADVEVKLLGFDAMIKILSKRRPGQLIKIIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTTTM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2372 365 CDD bHLH_AtFAMA_like 167 234 - -
Tpr1g2372 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 215 IPR011598 GO:0046983
Tpr1g2372 365 Gene3D - 155 230 IPR036638 GO:0046983
Tpr1g2372 365 MobiDBLite consensus disorder prediction 129 167 - -
Tpr1g2372 365 SMART finulus 170 221 IPR011598 GO:0046983
Tpr1g2372 365 MobiDBLite consensus disorder prediction 145 167 - -
Tpr1g2372 365 CDD ACT_UUR-ACR-like 290 354 - -
Tpr1g2372 365 Pfam Helix-loop-helix DNA-binding domain 165 216 IPR011598 GO:0046983
Tpr1g2372 365 PANTHER TRANSCRIPTION FACTOR FAMA 28 363 - -
Tpr1g2372 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 230 IPR036638 GO:0046983
Tpr1g2372 365 PANTHER TRANSCRIPTION FACTOR FAMA 28 363 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2372 Tpr-Chr1 26613515 26616733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2372 58 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.143 1.05e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2372 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2372 - - gmx:100813515 440.654