Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1684 ATGTATACAACTCAGTGGCCTCAGGAGATTATGGTGAAACCAATAGTAACAACAAATCATCATGTGTTGGAGAAAAAGCCAAAGCCACAAAAAGAACAACCTATAAACTGTCCAAGATGTAATTCAATAAACACAAAATTTTGTTACTACAACAATTATAGCTTAACACAACCAAGATATTTCTGCAAAACATGTAGAAGATATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCAAGAAAAAACAAAAGATCTTCATCTTTTTCTAATTCTTCAATTTCAACAAAAAACCAACATGCTCATGAATTTGTTGATGTTACACTTACACCACAAAATAAGATTCATCATGAAGATCAAGGACAAGATCTAAATTTGTCTTTTCCTTCAATAACACTAAGATCTAGTGAATTGGTTCAACAAAATAATAACAACACTTCAACTTCTAATCAGTTTTCAGCAATGGAGCTTCTCACTGGGATAGGTGGATTTACTTCAAGGGGTTTACAACATCCTTTTATGCCTGTTCAACTTCAAGGTGGATTTTCTATGCAAGATTTTAAGCAAGTGCCAATGAGTTTTTGTTTAGATGGAATTAATGGAGAAAGTGGATTTGCAAGTGGTGTTCAAGAGATAAGTGAAGGAAAAGTTTTGTTTCCTTTTGAGGATTTAAAACAAGTTTCTAGTACTAATGATAACCTAACATTGGGTTTGGATGAGAATAATATTAAGGAGGATCAACAAGGTTATTCAACTGGGATTTGGACCGGAATGTTGGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGATCATGGTCGTAA 834 0.3525 MYTTQWPQEIMVKPIVTTNHHVLEKKPKPQKEQPINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNKRSSSFSNSSISTKNQHAHEFVDVTLTPQNKIHHEDQGQDLNLSFPSITLRSSELVQQNNNNTSTSNQFSAMELLTGIGGFTSRGLQHPFMPVQLQGGFSMQDFKQVPMSFCLDGINGESGFASGVQEISEGKVLFPFEDLKQVSSTNDNLTLGLDENNIKEDQQGYSTGIWTGMLGGGGGGGGGGGSWS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1684 277 MobiDBLite consensus disorder prediction 80 101 - -
Tpr1g1684 277 MobiDBLite consensus disorder prediction 84 101 - -
Tpr1g1684 277 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Tpr1g1684 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 5 264 - -
Tpr1g1684 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 264 IPR045174 GO:0003700|GO:0006355
Tpr1g1684 277 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Tpr1g1684 277 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1684 Tpr-Chr1 16038416 16039969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1684 1 266 C2C2-Dof Transcription Factor Family AT4G24060 38.643 6.69e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr1g1684 zf-Dof 7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1684 - - mtr:MTR_1g077600 298.901