Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1074 ATGCAGCGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAAGAAGAACGACGTAAGATTCAAGTTTTCCCTAAAGAACTACCTCTTTCATCAGAACTCGTTACACAAGCTATTGATGCTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAACAATCTGAGTGTTCTGAACAGACAACATCAACAGATGGACCTGTTTTGGAAGAGTTTATTCCAATTAAGAAAAGGGCTTCACCTTATTGTGAACAAGTTTATGATGTTGATGATGAAGAAGATGATGAACAACATTCTCATCATAAGCAACAAAAGATTTCAATGGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCTCCTTCTCATGAGGATGTTACTAGGAAAGTAGTGCCTGTGATGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTCCAAAAAGAAGAAAGAGTTAACAATAGGACATGTGAATTGTTGAGTAAAGGACAACCCTCTTCGACAGGTGTAGCTGCTGTGAGTTCTAATGCGGCTACTGTCACCAGTAACAATGCTGCAAACAGCAAAAGAGATGAGAAAGAAGAAAAGAGAAAGCAGCGCCGGTGCTGGTCGCAGGATTTGCATAAGCGCTTCTTACAGGCACTTCAACAACTTGGAGGTGCAGATTCTGCAACACCAAAGCAAATTAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACAAGAAGACCAAGTCCGTCAAACAACGAAAGTGCTAATTCACAATCAACAGCACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACAACAAGAATATGGTGGGGTAGCTTCATCAACAACATCAGGGGAAATGACAAAGGTTGTAGCACCTTCTGGAATCTATGCACCAGTGGCCACACATCCTCCTCCAGCCGCGACAATTAAGAAGCCCGAGTTTAATAATAGTGAAGATCCTGTTCATTCAAATTCACCTACATCATCATCTTCTACACATAATACTACCAATACTTCCCTTGGCTATTGA 1110 0.4 MQRFKMGFSDYIQALEEERRKIQVFPKELPLSSELVTQAIDACRQQLSGTTTEYNLNGQQSECSEQTTSTDGPVLEEFIPIKKRASPYCEQVYDVDDEEDDEQHSHHKQQKISMDKKKSDWLRSVQLWNPDPPSHEDVTRKVVPVMELKRNGSGGGAFHPFQKEERVNNRTCELLSKGQPSSTGVAAVSSNAATVTSNNAANSKRDEKEEKRKQRRCWSQDLHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPSNNESANSQSTAPFVLVGNIFVQQQEYGGVASSTTSGEMTKVVAPSGIYAPVATHPPPAATIKKPEFNNSEDPVHSNSPTSSSSTHNTTNTSLGY* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1074 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 268 IPR006447 GO:0003677
Tpr1g1074 369 MobiDBLite consensus disorder prediction 96 117 - -
Tpr1g1074 369 Gene3D - 212 270 - -
Tpr1g1074 369 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 364 - -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 178 201 - -
Tpr1g1074 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 364 IPR044787 GO:0003700|GO:0006355
Tpr1g1074 369 Pfam Myb-like DNA-binding domain 215 266 IPR001005 -
Tpr1g1074 369 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 100 117 - -
Tpr1g1074 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 270 IPR017930 -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 202 217 - -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 336 369 - -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 345 369 - -
Tpr1g1074 369 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1074 Tpr-Chr1 9672466 9675100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1074 10 338 G2-like Transcription Factor Family AT1G68670 45.614 3.03e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g1074 Myb_DNA-binding 8.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1074 1 9672466 9675100 Tpr1g1074 1 9672466 9675100 ECH