Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1072 ATGGAATTAGCAGGTAGTTGCACAGATGAAACAACCACCACCACCATCACCACAAGCAATGACTCTCTTTCGGTATCTCTCATTCCGGCGAAACTATCACCACCGCCGACGAACGCACTAAGCCGCGTCGGCAGTGGTGCTAGTGTGGTGGTAGATCCCGAAATTTGCGGCGGATCCGGTGAAGCTGAGTCTCGTAAACTTCCTTCATCTAAGTATAAAGGCGTTGTGCCACAGCCGAACGGACGTTGGGGAGCACAGATTTACGAGAAGCATCAGCGCGTGTGGTTAGGTACGTTCAATGAAGAAGATGAAGCTGCAAGAGCTTACGATATCGCTGCTTTAAGATTTCGTGGAAAAGACGCTGTTACAAATTCTAAAACTCTCACCAGCGTAAATAACGATACCGATGAAGCTGAAGCTGAGTTTCTGAACTCGCATTCCAAATCTGAGATCGTTGATATGCTAAGAAAACATACCTACGACGATGAGCTTAAACAGAGCATGCGTGACACGTGCGGCGGAAGACAGCGTCGCAACGGAGAATTATATGGTGCAGCGTCACGTGGCGCGTGTGATGCTAAAGCGCGTGAACAGTTGTTTGAGAAAACGGTTACGCCGAGTGACGTTGGAAAATTGAATCGGTTGGTGATACCTAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTCGCGGTTGCCGTCTCCGGCGAGGGAATCTCGCCGTCTGTGGCGGCGGCGAAGGGTTTACTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAAAGTTACGTTTTAACCAAAGGTTGGAGCCGGTTCGTTAAAGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGATCGACCGGACCGGATAGACAGCTCTACATTGACTGTAAAGCAAGAAGCAGTAGTGTTGTCGGTGTTGGTGAAGTTGATAGTAATAAAACCGGTGGTTTGTTTATTTCGGTCCGACCGGTTGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTACTGTTGGTGGTAGTTGCAATGGGAAGAGAAAAGAAATGGAATTTTTTGCTTTGGAATGCACCAAAAAACCAAAGATTATTGGAGCATTATAA 1179 0.4741 MELAGSCTDETTTTTITTSNDSLSVSLIPAKLSPPPTNALSRVGSGASVVVDPEICGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKTLTSVNNDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDTCGGRQRRNGELYGAASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVSGEGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSSSVVGVGEVDSNKTGGLFISVRPVVEPVQMVRLFGVNLLKLPGSDGTVGGSCNGKRKEMEFFALECTKKPKIIGAL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1072 392 CDD B3_DNA 199 301 IPR003340 GO:0003677
Tpr1g1072 392 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Tpr1g1072 392 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 2 392 - -
Tpr1g1072 392 CDD AP2 70 124 IPR001471 GO:0003700|GO:0006355
Tpr1g1072 392 SUPERFAMILY DNA-binding pseudobarrel domain 198 314 IPR015300 -
Tpr1g1072 392 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Tpr1g1072 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 2 392 IPR044800 GO:0003700
Tpr1g1072 392 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Tpr1g1072 392 SMART B3_2 200 315 IPR003340 GO:0003677
Tpr1g1072 392 ProSiteProfiles B3 DNA-binding domain profile. 200 316 IPR003340 GO:0003677
Tpr1g1072 392 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Tpr1g1072 392 SUPERFAMILY DNA-binding domain 70 124 IPR016177 GO:0003677
Tpr1g1072 392 Pfam B3 DNA binding domain 200 306 IPR003340 GO:0003677
Tpr1g1072 392 Gene3D - 189 322 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1072 Tpr-Chr1 9643646 9645401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1072 6 392 B3 DNA Binding Superfamily AT1G25560 57.576 1.26e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Tpr1g1072 B3 2.2e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1072 1 9643646 9645401 Tpr1g1072 1 9643646 9645401 ECH