Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1063 ATGATACAAGAAGATCAAGGACAGTGTTCTTCTCAAACAATCAATAACTTTGAAACCTATCAAGAACAGTTTCTCCTTCAACAACAAATCATGAGACAACAACAAAACACTTTCTCTTTCCCTTCATCAGCTGATCATCAAGTTTCACCAATCTTTCAGCAACCATGGTCTATGCAACAACTTCATCATCATAATCATCATGTTCATGACCCTTTTGTTATTCCTCAACAACAAACTTCATCATCACCATATGCAAGTTTGTTCAATAGATCAACAAGGGTTCCTTCTCTTCAATTTGCATATGATCATCATCATCATGGTTCTGAACATCTTAGAATCATATCAGATACTCTTCAACATGGATCAGGTGTACCTTTTGGTGGTCTTCATCAAAGTGAACTTGGAAAAATGAGTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCTGCTTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTACCAAGCACAACCAAAACAGATAAAGCATCATTACTAGCAGAAGTGATTCAACATGTAAAAGAATTGAAACGTCAAACATCACTAATAGCAGAAACAAGTCCAGTTCCAACTGAATGTGATGAATTAACAGTAGATGCTGCTACAGATGATGATGAAGAATATGGATCAAATTATGGAAACAAATTTATAATAAAAGCTTCACTTTGCTGTGATGATAGATCAGATCTTTTACCTGAACTAATCAAAACATTGAAAGCATTAAGGTTAAGAACACTCAAAGCTGATATAACAACACTTGGTGGACGTGTTAAGAATGTTTTGTTCATTACTGGTGAAGAAGAAGATCATGAATATTGCATTAGTTCAATACAAGAAGCATTGAAAGCTGTTATGGAGAAAAGTGTTGGTGATGATTCTGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCAATATCTAATTAA 999 0.3504 MIQEDQGQCSSQTINNFETYQEQFLLQQQIMRQQQNTFSFPSSADHQVSPIFQQPWSMQQLHHHNHHVHDPFVIPQQQTSSSPYASLFNRSTRVPSLQFAYDHHHHGSEHLRIISDTLQHGSGVPFGGLHQSELGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTECDELTVDAATDDDEEYGSNYGNKFIIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEEDHEYCISSIQEALKAVMEKSVGDDSASGSVKRQRTNIISISN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1063 332 PANTHER TRANSCRIPTION FACTOR BHLH30 60 330 - -
Tpr1g1063 332 PANTHER TRANSCRIPTION FACTOR BHLH30 60 330 IPR045847 GO:0003700|GO:0006355
Tpr1g1063 332 SMART finulus 155 204 IPR011598 GO:0046983
Tpr1g1063 332 Pfam Helix-loop-helix DNA-binding domain 152 198 IPR011598 GO:0046983
Tpr1g1063 332 Gene3D - 144 205 IPR036638 GO:0046983
Tpr1g1063 332 CDD bHLH_AtAIG1_like 144 222 - -
Tpr1g1063 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Tpr1g1063 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 205 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1063 Tpr-Chr1 9509913 9513340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1063 84 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 66.296 9.17e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g1063 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1063 1 9509913 9513340 Tpr1g1063 1 9509913 9513340 ECH