Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1060 ATGATGGCCGCTTCGGACACTGCATCTCGTTCCAGTTCCGCGGCCGATTCCTACATTGGTTGCTTGATTAGTTTAACGTCAAAAAGTGAGATCAGATACGAAGGTGTTCTCTATAACATCAACACCGATGAGTCTAGTATTGGTCTCAGAAACGTGATCTCTTTTGGAACTGAAGGAAGGAAAAAGGAAGGTCCACAACTTCCTCCCGGTGAAAAGATCTATGAGTATATACTGTTCCGTGGGACGGACATCAAGGATTTACAGGTGAAATCTTCCCCACCTGTCCAGCCTACTGCACCAACAAGTACCGATCCAGCTATTATTCAGTCTCAGTATCCTCGCTTAGTCACACCCTCTACAAGTTTACCTGCTGCAAGTGGATCTTTGACTGATGCTAGTCCTCCTACAACACAGCTTGGACACCCAGGGTCAAATTTTCAAGGGCCTTTGTATCAACCTGGGGGAAATGTAGTGTCATGGGGAGCTTCTTCACCTGCTCCAAATGCAAATGGCGGTGGGCTTGCTATGCCAATGTACTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCAGTTACATCAGCAATCTTTGCTTCGACCTCCACCTGGCTTATCCATGCCTTCATCTATGCAGCAACCAATGCCTTCTTCTATGCAGCAGCCGATGCCTTCATCTATGCAGCAGCCGATGCATTCATCTGTGCAGCAGCCGATGCATTCATCTGTACAGCAGCCAATGCATTCATCTGTGCAGCAGCCGATGAATTCATCTGTTCAGCAGCCGATGCATTCATCTGTGCAGCAGCCGATGCCTTCATCTGTGCAGCAGCCAATGCATTCATCTGTGCAGCAGCCGATGCATTCATCTGTGCAGCAGCCGATGCATTCATCTATGCAGCAGCCGTTGCATTTTCCCAATTTTAGTCCCTCTTTACCAACCGGGCCTTCAAATTTTCCAGAATTCCCGTCAGCTTTCCTCCCTGTGGGCACTAGTTCCCCTAATATAACATCTACTTCTGCACCTCCATTGAATCTTTCAACAACAATTTTACCTTCAGCACCTCCGGCTACACTAGTTCCTGAAACTTTTCAAGTGTCAGCTCCAAACAAGACACCAACTGTGTCACTTCCTGCAGTCACACTAAGTGCTAACTTTTCATCGCTAGCTCCTTTTTCCAATGGTGGTCCCGATATAAGTGCTGCAGCACCATTGGCCAATAAACCTAATGCAAGTTCAGGTCCAAGTTTGTCATACCAAACTGTACCCAAGCAGACAACTCCTTCAATTGTTGGTTCTTCAAATACTATCCGCACAGAACCCCCAGTCCCTTCTCTGGTAACCCCAGCTCAATTATTGCAGTCTGGACAAACTGTAGTAGCTTCATCCAAGCCTTTACAAACAGCACATAAGGATGTTGAAGTGGTTCAGGTATCATCAGCATCGCCTCCAGAACCATCTGTGCCTGTCACTGCTGAGTCTCAGCCACCAATACTTCCATTGCCAGTACGGCCAACTCAAAGGCCCGGTGGAGCTTCTACCCAAACTCCTCATCATGGCTATGGTTATAGGGGACGCGGAAGAGGAGGAAGAGGAATTGGGGGATTCCGCCCATCTGAGAGATTCACGGAGGACTTTGACTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCACCTAGGTAAAAGCAACAAGAAAGACGGGGAAGAAAATGCCAGTGATGAAGATGGCGGTCAAGATGAAGACGATGGCGATGTACCAAACTTGGAGGTTAAGCCTGTTTATAACAAGGATGATTTCTTTGACTCACTCTCGTGCAACTCGCTCAATAATGATCCACAAAATGGAAGGATTAGATATTCTGAACAAATCAAGATGGATACTGAGACATTTGGTGATTTTACGAGAAACCGTGGTGGATGGGGTGGCCGTGGTCCATGGCGCGGTGGTGGCGGTGGACGTGGCCGAGGTGGTGGTTATTATGGTCGAGGTGGTGGTGGTGGTTATGGCTATGCCGGAAGAGGAAGAGGGGGGCGTGGCATGTCTGGCGGTCGTTATTAG 2073 0.48 MMAASDTASRSSSAADSYIGCLISLTSKSEIRYEGVLYNINTDESSIGLRNVISFGTEGRKKEGPQLPPGEKIYEYILFRGTDIKDLQVKSSPPVQPTAPTSTDPAIIQSQYPRLVTPSTSLPAASGSLTDASPPTTQLGHPGSNFQGPLYQPGGNVVSWGASSPAPNANGGGLAMPMYWQGYYGAPNGLPQLHQQSLLRPPPGLSMPSSMQQPMPSSMQQPMPSSMQQPMHSSVQQPMHSSVQQPMHSSVQQPMNSSVQQPMHSSVQQPMPSSVQQPMHSSVQQPMHSSVQQPMHSSMQQPLHFPNFSPSLPTGPSNFPEFPSAFLPVGTSSPNITSTSAPPLNLSTTILPSAPPATLVPETFQVSAPNKTPTVSLPAVTLSANFSSLAPFSNGGPDISAAAPLANKPNASSGPSLSYQTVPKQTTPSIVGSSNTIRTEPPVPSLVTPAQLLQSGQTVVASSKPLQTAHKDVEVVQVSSASPPEPSVPVTAESQPPILPLPVRPTQRPGGASTQTPHHGYGYRGRGRGGRGIGGFRPSERFTEDFDFTAMNEKFKKDEVWGHLGKSNKKDGEENASDEDGGQDEDDGDVPNLEVKPVYNKDDFFDSLSCNSLNNDPQNGRIRYSEQIKMDTETFGDFTRNRGGWGGRGPWRGGGGGRGRGGGYYGRGGGGGYGYAGRGRGGRGMSGGRY* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1060 690 Pfam Scd6-like Sm domain 18 91 IPR025609 -
Tpr1g1060 690 ProSiteProfiles FFD box profile. 597 612 IPR025761 -
Tpr1g1060 690 SMART LSM14_2 12 112 IPR025609 -
Tpr1g1060 690 ProSiteProfiles TFG box profile. 619 639 IPR025768 -
Tpr1g1060 690 SMART FDF_2 540 639 IPR019050 -
Tpr1g1060 690 CDD LSm14_N 18 89 IPR025609 -
Tpr1g1060 690 MobiDBLite consensus disorder prediction 210 250 - -
Tpr1g1060 690 PANTHER PROTEIN DECAPPING 5-LIKE 287 681 - -
Tpr1g1060 690 PANTHER PROTEIN DECAPPING 5-LIKE 2 272 - -
Tpr1g1060 690 MobiDBLite consensus disorder prediction 207 250 - -
Tpr1g1060 690 PANTHER SCD6 PROTEIN-RELATED 287 681 - -
Tpr1g1060 690 PANTHER SCD6 PROTEIN-RELATED 2 272 - -
Tpr1g1060 690 MobiDBLite consensus disorder prediction 506 531 - -
Tpr1g1060 690 ProSiteProfiles DFDF domain profile. 534 570 IPR025762 -
Tpr1g1060 690 MobiDBLite consensus disorder prediction 566 592 - -
Tpr1g1060 690 Pfam FDF domain 541 636 IPR019050 -
Tpr1g1060 690 SUPERFAMILY Sm-like ribonucleoproteins 17 94 IPR010920 -
Tpr1g1060 690 Gene3D - 8 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1060 Tpr-Chr1 9422730 9428679 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1060 1 9422730 9428679 Tpr1g1060 1 9422730 9428679 ECH