Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1057 ATGATGCCCCCTGAGCAAGAAACAACTATTAATGCACCAAATAGCATTTCACCAAACACAAACAGAACAGAAACCATCTCTATCCATGGTGAGCCAGAAGGTTCTTCTTCTAATAAAGTTAAACCCAGTTTGGATATTGATCATAACGCCATTAATATTCCTTCTCATCCAACTACACCAATCACATCATTTTCTATTCTACCTCAATCCTTGCGTCCGGTTACCATCAAATTTGAAGATGTTTCATACAGCATAACCTTAACAAACCAAAAGAAAAACGGTTGTGTTTTGGGAAAAGAATCAAAAGTAACAAGAAAAATTCTCAATGGAGTCACCGGAATAGCAAAACCAGGCGAGTTAACTGCAATGTTGGGTCCATCAGGAAGTGGCAAAACCACCCTACTAACCGCCTTAGCCGGAAGACTAACCGGAAAAGTCACCGGAACAATAACATACAACGGAAACTCAGACTCATCCTACATTAAACGCAAAATAGGTTTTGTTTCACAAGACGACGTCGTTTACCCTCACTTAACAGTGTTAGAAACATTAACCTACAGTGCTCTATTAAGACTTCCCAAAACACTCACCAGAGGAGAGAAAATCGAACACGCGGAGAGGATAATTACGGAATTAGGCCTCACGCGTTGTCGAAATTCTCCTGTCGGTGGGTGTATGGGACTTTTCCGAGGAATCTCCGGTGGAGAAAGGAAACGGATGAGTATTGCACAAGAAATGTTGGTGAACCCGAGTTTGTTGTTGTTGGATGAACCAACTTCCGGTTTGGATTCGACCACGGCTCAACTTATTGTTTCGGTTCTTAAAGGATTGGCTCGGTCCGGTCGAACCGTTGTTACTACTATTCATCAGCCTTCGAGCCGGTTGTATAGGATGTTTGATAAAGTTGTGGTTTTGTCTGATGGGTACCCGATTTATAGTGGTAATGCGGGTCGGGTTATGGATTATCTTGGATCTGTTGGATTTGTTCCGGGTTTTAACTTTGTTAATCCTGCTGATTTTCTCCTTGACCTTGCTAATGGCATAGTTGCTGATGTGAAACATGATGAGATAGAGAAGCATGATCAAGATCAAGCTTCAGTGAAACAGTCACTAATTTCATCCTATAAGAAAAACTTATACCCTGCTCTTAAAGAAGATATTCAGCAAAATAACACTGAACCACTGGTTTTTCCATCAAGAGGAACATCCAGACGTTCTTCTGAAAACCAATGGAACACTAGCTGGTGGGAGCAATTCAAGGTTCTGCTCAAGAGGGGTCTACAAGAGAGGAGACATGAATCTTTTTCTGGCTTAAAGATTTTCCAAGTCTTGTCTGTGTCCATTCTTTCTGGACTCCTTTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTGGGACTACTATTCTTCTTCTCGATCTTCTGGGGATTCTTCCCTCTCTTTAATGCAATCTTTGCATTTCCACTTGATAGACCAATGCTAAAAAAAGAAAGATCATCAGGAATGTACCATCTCTCCTCCTACTATGTTGCTAGGATGGTAGGAGACTTACCAATGGAGCTTGTTCTTCCAACAATCTTTGTAACCATCACCTATTGGATGGGTGGTCTTAAGCCTTCTTTGGTTACATTTGTGTTAACCCTTTTGATCATGCTTTTCAATGTTCTAGTCTCTCAAGGAATAGGCTTAGCACTTGGTGCAATTCTAATGGATGTTAAGCAAGCCACAACTCTAGCTTCAGTGACAATGTTGGTTTTTCTTTTAGCTGGTGGTTACTACATTCAGAAAATGCCTTCTTTTATAGCTTGGCTAAAGTACTTTTCTTTCAGTCATTACTGTTATAAGTTGCTTGTAGGGGTGCAGTATTCAGTAAATGAGATCTATGAATGTAGACAAGGGTTGCATTGTAGGGTAAGAGATTTTCCAGCCATTAAGTGTTTGGAGATTGGTAATATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTTGTTGGATACAGAGTTGTTGCATATTTAGCTTTGAGGATGGGACAGCCTAAATGCCTAAGAACTTAA 2058 0.4086 MMPPEQETTINAPNSISPNTNRTETISIHGEPEGSSSNKVKPSLDIDHNAINIPSHPTTPITSFSILPQSLRPVTIKFEDVSYSITLTNQKKNGCVLGKESKVTRKILNGVTGIAKPGELTAMLGPSGSGKTTLLTALAGRLTGKVTGTITYNGNSDSSYIKRKIGFVSQDDVVYPHLTVLETLTYSALLRLPKTLTRGEKIEHAERIITELGLTRCRNSPVGGCMGLFRGISGGERKRMSIAQEMLVNPSLLLLDEPTSGLDSTTAQLIVSVLKGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNAGRVMDYLGSVGFVPGFNFVNPADFLLDLANGIVADVKHDEIEKHDQDQASVKQSLISSYKKNLYPALKEDIQQNNTEPLVFPSRGTSRRSSENQWNTSWWEQFKVLLKRGLQERRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLKKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYKLLVGVQYSVNEIYECRQGLHCRVRDFPAIKCLEIGNMWGDVAALTVMFVGYRVVAYLALRMGQPKCLRT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1057 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 50 678 - -
Tpr1g1057 685 Pfam ABC-2 type transporter 417 623 IPR013525 GO:0016020|GO:0140359
Tpr1g1057 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Tpr1g1057 685 MobiDBLite consensus disorder prediction 7 21 - -
Tpr1g1057 685 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g1057 685 SMART AAA_5 117 310 IPR003593 -
Tpr1g1057 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 678 - -
Tpr1g1057 685 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524
Tpr1g1057 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 332 IPR003439 GO:0005524
Tpr1g1057 685 CDD ABCG_EPDR 73 314 - -
Tpr1g1057 685 Pfam ABC transporter 109 260 IPR003439 GO:0005524
Tpr1g1057 685 Gene3D - 69 326 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1057 Tpr-Chr1 9345299 9349698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1057 106 308 Calmodulin-binding Proteins AT2G36910 31.455 1.60e-14 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1057 1 9345299 9349698 Tpr1g1057 1 9345299 9349698 ECH