Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g0482 | ATGGCTTTAGAGTTACAATCTCTCAATTCTTCTCCAACAGGGGCTCCTACTCCTTACCCAACCTTCAAACCACAACAACAAGATCAAGAGATTCACGAACGCGATTCTTTCGTTAAGAAGAAAAGATCAAAACGACCGCGTATTAGTAATCCACCAACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTTGCACAAAGCGGAAACAAAAACAACAAAATCAACGGCTCTGATGATTTTATTCATCACCAAACTGAATCATCACCATCGTCTTCACAATTGCAACAACCATCGCCACCGTCACCGGTGAAGCTGAATCATCGGTGCAGTGTATGTAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCATAAAGCAAGTCACCGCAAATCCTCATCTGAAAACCAAACCACCGTTGTTAACGACACCGTCTCTGTCACAACCGCAACCGTTACTTCCGGTAAGATGCACGAGTGTTCCATCTGTCATAAGAGTTTCCCTACCGGTCAAGCTCTTGGTGGACACAAACGGTGTCACTACGACGGAGGTAACCACAATAACAATAACAACAGTAATAGCAACGTCAACGCTAATAACAACAGTGGAATCACAATCTCTGATGGCGCCGCCGCGTCTTCCTCCATCAGTCACCGTGGATTTGATCTCAATTTACCAGCGCCTCTCACTGAATTCTGGTCTCCGTTGGGATTAGGCGGTGGAGATTCGAAGAAGAAGAATAAGGTTAACGTGAGTCTGGCCGGAATCGGTGAACAAGAGGTGGAAAGTCCGTTGCCGGTAACTGCAAAAAGGCCGCGTTTGTTTTCAGAGGAAGAAAACAATGATAAAACGGCGTAG | 861 | 0.453 | MALELQSLNSSPTGAPTPYPTFKPQQQDQEIHERDSFVKKKRSKRPRISNPPTEEEYLALCLIMLAQSGNKNNKINGSDDFIHHQTESSPSSSQLQQPSPPSPVKLNHRCSVCNKAFPSYQALGGHKASHRKSSSENQTTVVNDTVSVTTATVTSGKMHECSICHKSFPTGQALGGHKRCHYDGGNHNNNNNSNSNVNANNNSGITISDGAAASSSISHRGFDLNLPAPLTEFWSPLGLGGGDSKKKNKVNVSLAGIGEQEVESPLPVTAKRPRLFSEEENNDKTA* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0482 | 286 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 277 | IPR044653 | GO:0003700 | |
| Tpr1g0482 | 286 | Pfam | C2H2-type zinc finger | 108 | 132 | - | - | |
| Tpr1g0482 | 286 | Pfam | C2H2-type zinc finger | 159 | 183 | - | - | |
| Tpr1g0482 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 108 | 181 | IPR036236 | - | |
| Tpr1g0482 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 159 | 181 | IPR013087 | - | |
| Tpr1g0482 | 286 | MobiDBLite | consensus disorder prediction | 256 | 286 | - | - | |
| Tpr1g0482 | 286 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
| Tpr1g0482 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 108 | 135 | IPR013087 | - | |
| Tpr1g0482 | 286 | Gene3D | Classic Zinc Finger | 106 | 181 | - | - | |
| Tpr1g0482 | 286 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Tpr1g0482 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 110 | 130 | IPR013087 | - | |
| Tpr1g0482 | 286 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
| Tpr1g0482 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 161 | 181 | IPR013087 | - | |
| Tpr1g0482 | 286 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 277 | - | - | |
| Tpr1g0482 | 286 | SMART | c2h2final6 | 108 | 130 | IPR013087 | - | |
| Tpr1g0482 | 286 | SMART | c2h2final6 | 159 | 181 | IPR013087 | - | |
| Tpr1g0482 | 286 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr1g0482 | Tpr-Chr1 | 4066256 | 4067559 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0482 | 3 | 275 | C2H2 Transcription Factor Family | AT1G27730 | 39.929 | 6.30e-47 | 155 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Tpr1g0482 | zf-C2H2_6 | 1.5e-12 | CL0361 |
Event-related genes