Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0409 ATGATATTCACGATGGGTCTCTTTCAAAGATCACATCTTCCTCTCGCCATCGTGCTTTCTCTCTCCTTTCTTTCTCTTGCGTTTTCCCTTGACATGTCCATTATTGACTATGATGCAAAAGTTGAATCTCATCTTATGAATATGTATGAATCATGGTTGGTTAAACATGGTAAGGTATATAATGCATTAGGTGAGAAAGAACGTAGATTTGAAATCTTTAAAGATAATCTTAGGTATGTTGAAAATCATAACAATGTGGAGGGTCAAAGTTTTAAATTAGGTCTCACAAAGTTTGCTGATCTTACCAATGAGGAATATCGTTCCATGTTTTTGGGTACAAGGAGTCGTAAATCTAAAGGTTTGTTATCTGGTTCTAAGAAAAGTACTCGTTATGCTTTTCGCGATGACGATGAATTGCCTGAGTCTGTTGATTGGAGGGAGAAAGGTGCTGTTGTTGATGTCAAAGATCAAGGCCAATGTGGGAGTTGTTGGGCATTCTCAACAGTTGGTGCTGTGGAAGGGATCAATAAAATTGTAACAGGTGATCTGATATCTCTATCAGAACAAGAGTTGGTGGATTGTGATAAAGGTTATAACATGGGATGCAATGGAGGTCTTATGGATAATGCTTTTGAGTTTATAATGCAAAATGGAGGCATTGATACCGAAGATGATTACCCTTATCGTGCTAGCGACAATACTTGTGATCCAAACAAGAAAAATGCCCGGGTAGTCACTATCGATGGATATGAAGATGTTCCAGAAAATGATGAGAAATCCTTGAAGAAGGCCCTTGCGTTTCAACCTGTTAGCGTTGCCATTGAAGCTGGTGGCAGGGCATTTCAACTTTACCAATCGGGTGTTTTTACCGGCACTTGTGGAACGGAACTTGATCACGGCGTTGTGGCAGTTGGATATGGAACAGAAAACGGCACAGATTACTGGTTAGTGAGAAACTCATGGGGTTCATCATGGGGTGAGGGTGGTTACATTAAGTTGGAGAGGAATTTGAAATCAACCCAAACTGGTAAGTGTGGGATTGCAATGGAAGCATCATATCCTGTCAAGAAGGGTCAGAACCCTCCAAACCCTGGTCCTACACCTCCATCACCTGCAAAGCCTTCAACTGTTTGTGATGAATACTACACTTGCTCAGCTGGGACTACATGCTGTTGCCTTTTTGAGTATGGAAACTTCTGCTTTGCTTGGGGATGCTGTCCTATTGAGTCTGCAACTTGCTGCGATGACGGTTCCAGCTGTTGTCCTCCTGATTACCCCGTCTGTGATGCTGACGCCGGAACTTGCCGATTGAGTAAAGATAATCCATTTGGAGTGAAAGCTTTGAAACGGACACCTGCTACAAGTACTTGGAGTTGGACTCAAAGAAAACTGCTATGA 1398 0.4199 MIFTMGLFQRSHLPLAIVLSLSFLSLAFSLDMSIIDYDAKVESHLMNMYESWLVKHGKVYNALGEKERRFEIFKDNLRYVENHNNVEGQSFKLGLTKFADLTNEEYRSMFLGTRSRKSKGLLSGSKKSTRYAFRDDDELPESVDWREKGAVVDVKDQGQCGSCWAFSTVGAVEGINKIVTGDLISLSEQELVDCDKGYNMGCNGGLMDNAFEFIMQNGGIDTEDDYPYRASDNTCDPNKKNARVVTIDGYEDVPENDEKSLKKALAFQPVSVAIEAGGRAFQLYQSGVFTGTCGTELDHGVVAVGYGTENGTDYWLVRNSWGSSWGEGGYIKLERNLKSTQTGKCGIAMEASYPVKKGQNPPNPGPTPPSPAKPSTVCDEYYTCSAGTTCCCLFEYGNFCFAWGCCPIESATCCDDGSSCCPPDYPVCDADAGTCRLSKDNPFGVKALKRTPATSTWSWTQRKLL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0409 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Tpr1g0409 465 Pfam Cathepsin propeptide inhibitor domain (I29) 49 106 IPR013201 -
Tpr1g0409 465 SUPERFAMILY Granulin repeat 376 409 - -
Tpr1g0409 465 PANTHER CYSTEINE PROTEASE 35 384 - -
Tpr1g0409 465 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Tpr1g0409 465 Gene3D Granulin 375 437 IPR037277 -
Tpr1g0409 465 SMART Inhibitor_I29_2 49 106 IPR013201 -
Tpr1g0409 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Tpr1g0409 465 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Tpr1g0409 465 Gene3D Cysteine proteinases 31 357 - -
Tpr1g0409 465 Pfam Granulin 389 435 IPR000118 -
Tpr1g0409 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 35 384 - -
Tpr1g0409 465 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Tpr1g0409 465 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Tpr1g0409 465 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Tpr1g0409 465 SMART GRAN_2 378 435 IPR000118 -
Tpr1g0409 465 CDD Peptidase_C1A 140 354 IPR039417 -
Tpr1g0409 465 SUPERFAMILY Cysteine proteinases 42 355 IPR038765 -
Tpr1g0409 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0409 Tpr-Chr1 3501976 3505053 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0409 1 3501976 3505053 Tpr1g0409 1 3501976 3505053 ECH
Tpr1g3657 1 40700788 40704952 Tpr1g0409 1 3501976 3505053 ECH