Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0396 ATGATCATGTCACTCTCACGATCATTCAGAAAATTCCCAAATCTTGTTACACTCTCAAAATCTTACCCACATTCTTTAACAAGTTCACATTTTGATCACAATTATTCAACACCCACATTCCAATTCATCCATAATCCATCTGGGTTTCTCAAATTCCACATTTTTCCATTTCACACATCACGTGCTAATAAACCCAAAACCACAAACCCAGATGCTGAAACAATCTGCAAAATCTTATCCACCAAACCCGATTCACCCGTCGATGTCTCTCTAGCCAACTTTCCGGTGAAGGTATCACCGGAGCTTGTGGTTGATGTCTTGAACAAACTCAGCAATGCTGGCATTCTCGCTCTTTCGTTCTTCCGTTGGGCGGAGAAACAGAAAGGATTCGAGCATAGTACAGAGAGTTTTCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTCAAGATGATTTGGAATTTGGTTGATGACATGAAACAAAGAAAATTGCTTAATGGTGACACTTTTTCGCTCATTGCTCGTAGATATGTTCGAGCTAGGATCATCAAGGAAGCATTGAAGACGTTTGAGAGGATGGAAAAATATGAATTGAAGCCTCAAATATCGGATTTCAACAAGTTAATTGATGTTTTGTGCAAGTCAAAGTTTCATGTTGAGAAAGCACAGGAACTGTTTGATAAAATGAGGCAATGGAATTTAGAGCCTAATCTTAAGTCCTATACTATTTTGTTAGAAGGTTGGAGTCAACAGCAAAATTTGTTGAAGGTTAGAGAGGTTTGTAGAGAGATGAGAGATGAGGGTTTTGAGCCTGATGTTGTTACTTATGGTATACTCATCAATGCATATTGTAAGGCTAAAAAATATGATGAGGCTATTGGTTTTTATCATGAGATGAAATCAAAGAATATAAGTCCTAGTCCTCATATATATTGTACTTTGATTATTGGTCTTGGTAATGGGAATAGATTGAATGAAGCTCTTGAATTCTTTGAAAAATCTAAGGTTAGTGGATTTCCACCTGAAGCGCCGACTTATAATGCTGTTGTTGGAGCTTACTGCTGGTCAGGGAGGATGGATGATGCTTGCAGAATTGTTGATGAGATGAGAGACCTTGGGATCGGTCCGAATTCTCGAACGTATGACATAATACTTGTTCACTTGATAAAGGGTGGGAGAGCAAAAGAAGCTTACTCAGTTTTCAAGAGAATGAGTAGTGAGATAGAGTGTGAGCCGAGGGTAAGCACGTATGAAATCATGGTGAGGATGTTATGTAATGAAGACCAATTGGATTTGGCAATGGTAGTTTGGGATGAGATGAAAGACAAAGGAATCCTTCCAGGAATACACATGTTTTCGACATTGATCATTTCCTTGTGTCATGAAAATAAGTTGGATGAAGCGTGTAAATACTTTCAACAAATGTTGGATGTTGGGATTCGGCCTACTGCCAATATGTTCAGTGCTTTCAAGAAAGCTCTAATAGACGCGGGAATGGAGAGTACTGTGATACATTTTGCTCGGAAAGTTGATAAACTGAGAAATACTCCATTAATTGCTTGA 1566 0.3851 MIMSLSRSFRKFPNLVTLSKSYPHSLTSSHFDHNYSTPTFQFIHNPSGFLKFHIFPFHTSRANKPKTTNPDAETICKILSTKPDSPVDVSLANFPVKVSPELVVDVLNKLSNAGILALSFFRWAEKQKGFEHSTESFHALIEALGKIKQFKMIWNLVDDMKQRKLLNGDTFSLIARRYVRARIIKEALKTFERMEKYELKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILLEGWSQQQNLLKVREVCREMRDEGFEPDVVTYGILINAYCKAKKYDEAIGFYHEMKSKNISPSPHIYCTLIIGLGNGNRLNEALEFFEKSKVSGFPPEAPTYNAVVGAYCWSGRMDDACRIVDEMRDLGIGPNSRTYDIILVHLIKGGRAKEAYSVFKRMSSEIECEPRVSTYEIMVRMLCNEDQLDLAMVVWDEMKDKGILPGIHMFSTLIISLCHENKLDEACKYFQQMLDVGIRPTANMFSAFKKALIDAGMESTVIHFARKVDKLRNTPLIA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 408 IPR002885 -
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Tpr1g0396 521 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 518 - -
Tpr1g0396 521 SUPERFAMILY TPR-like 273 478 IPR011990 GO:0005515
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 237 IPR002885 -
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Tpr1g0396 521 PANTHER OS01G0505500 PROTEIN 68 518 - -
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Tpr1g0396 521 Pfam PPR repeat 170 197 IPR002885 -
Tpr1g0396 521 Pfam Pentacotripeptide-repeat region of PRORP 395 509 IPR033443 -
Tpr1g0396 521 Gene3D Tetratricopeptide repeat domain 218 372 IPR011990 GO:0005515
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Tpr1g0396 521 Pfam PPR repeat family 206 248 IPR002885 -
Tpr1g0396 521 Pfam PPR repeat family 346 386 IPR002885 -
Tpr1g0396 521 Pfam PPR repeat family 272 319 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 311 342 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 206 238 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 452 484 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 241 274 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 417 449 IPR002885 -
Tpr1g0396 521 TIGRFAM PPR: pentatricopeptide repeat domain 381 413 IPR002885 -
Tpr1g0396 521 Gene3D Tetratricopeptide repeat domain 385 511 IPR011990 GO:0005515
Tpr1g0396 521 Gene3D Tetratricopeptide repeat domain 87 217 IPR011990 GO:0005515
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Tpr1g0396 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0396 Tpr-Chr1 3397174 3399324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0396 242 513 Miscellaneous Gene Families AT4G11690 25.623 2.67e-22 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0396 1 3397174 3399324 Tpr1g0396 1 3397174 3399324 ECH